View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10258_high_12 (Length: 241)

Name: NF10258_high_12
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10258_high_12
NF10258_high_12
[»] chr7 (13 HSPs)
chr7 (19-241)||(4862969-4863191)
chr7 (19-241)||(4698004-4698226)
chr7 (19-240)||(4784650-4784871)
chr7 (19-231)||(4846845-4847057)
chr7 (19-240)||(4817079-4817300)
chr7 (19-231)||(4712890-4713102)
chr7 (25-231)||(4642790-4642996)
chr7 (20-231)||(4666016-4666227)
chr7 (19-228)||(4652600-4652809)
chr7 (25-183)||(4671726-4671884)
chr7 (23-230)||(4660888-4661095)
chr7 (23-231)||(4629993-4630201)
chr7 (25-231)||(4635943-4636149)
[»] chr4 (1 HSPs)
chr4 (19-231)||(18926563-18926775)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 4862969 - 4863191
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862969 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 4863068  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863069 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 4863168  T
Q  219 cgagaatcatctcctcaccttcg 241  Q
    |||||||||||||||||||||||    
T  4863169 cgagaatcatctcctcaccttcg 4863191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 4698226 - 4698004
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||  || ||||||    
T  4698226 agccacccatttatcatctaacaatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgct 4698127  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||    
T  4698126 gcccccaatagaatctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaa 4698027  T
Q  219 cgagaatcatctcctcaccttcg 241  Q
    |||||||||||||  ||||||||    
T  4698026 cgagaatcatctctgcaccttcg 4698004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 4784871 - 4784650
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| ||||| |||||||| |||||||  ||     
T  4784871 agccacccatttttcatccaacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcg 4784772  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    || || || ||||||||||| |||| |||||| ||||||||||  ||||| || ||||||||||||||||  ||| ||||||||||||||||||||||||    
T  4784771 gcacctaatagaatctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaa 4784672  T
Q  219 cgagaatcatctcctcaccttc 240  Q
    |||||||||||||  |||||||    
T  4784671 cgagaatcatctctacaccttc 4784650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 4847057 - 4846845
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||  ||||  ||||||||||||  ||||||||||||    
T  4847057 agccacccatttttcatccaacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgct 4846958  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    || || || |||||||| ||||| |  |||||  ||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||    
T  4846957 gcacctaatagaatctcgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaa 4846858  T
Q  219 cgagaatcatctc 231  Q
    | |||||||||||    
T  4846857 ctagaatcatctc 4846845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 4817300 - 4817079
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||| ||||| | |||||| |||||||  ||     
T  4817300 agccacccatttttcatccaacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcg 4817201  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    || || || ||||||||||| |||| |||||| ||||||||||  ||||| || ||||||||||||||||  ||| ||||||||||||||||||||||||    
T  4817200 gcacctaatagaatctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaa 4817101  T
Q  219 cgagaatcatctcctcaccttc 240  Q
    |||||||||||||  |||||||    
T  4817100 cgagaatcatctctacaccttc 4817079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 4713102 - 4712890
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||  ||||  ||||||||||||| || |||||||||    
T  4713102 agccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgct 4713003  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    || |  || ||||| | |||||| |  |||||  |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||    
T  4713002 gcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaa 4712903  T
Q  219 cgagaatcatctc 231  Q
    | |||||||||||    
T  4712902 caagaatcatctc 4712890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 4642790 - 4642996
Alignment:
Q  25 ccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgccccc 124  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||  |||||||||||||||  | ||| ||||| || ||     
T  4642790 ccatttttcatccaacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacct 4642889  T
Q  125 aacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaa 224  Q
    || ||||| ||||| |||| | ||||||  || || || ||||  |||||||||||||| ||||  ||||| ||  | |||||||| |||||||| | ||    
T  4642890 aatagaatttcaagcctctgcctccaaggtagtggctcgttattagaaccataaagatactcacaaagagtaccgtgctgcatgaactcataaaccaaaa 4642989  T
Q  225 tcatctc 231  Q
    |||||||    
T  4642990 tcatctc 4642996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 4666016 - 4666227
Alignment:
Q  20 gccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctg 119  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||| || || || || ||  ||| |||||||||||  | ||| || ||||    
T  4666016 gccatccatttttcatccaacaatatgttggtgctcttcacgtcacggtgtattatcttctgtttcacctcagtatgaagataattcagccctctcgctg 4666115  T
Q  120 cccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaac 219  Q
    | ||||| ||||||||||| |||| |||||| |  || || |  ||||  |||||||||||||| || |  ||||| ||  | |||||||| ||||||||    
T  4666116 cacccaaaagaatctcaagcctctgcttccatgataggggctggttattagaaccataaagatactcgcaaagagtaccgtgctgcatgaactcataaac 4666215  T
Q  220 gagaatcatctc 231  Q
     |||||||||||    
T  4666216 cagaatcatctc 4666227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 4652600 - 4652809
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| || ||  | |||||||||||||  | ||| || ||     
T  4652600 agccacccatttctcatccaacaatatgttggtgctcttcacgtcacggtgtattatcttgtgtttcacctctgcatgaagataattcagccctctcgcg 4652699  T
Q  119 gcccccaacagaatctcaagtctcttcttcca-agtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataa 217  Q
    |  ||||| ||||||||||| |||||||||||  ||||| || |  ||||  |||||||||||||| ||||  ||||| ||  |||||||||| ||||||    
T  4652700 gaacccaatagaatctcaagcctcttcttccacggtaag-ggctggttattagaaccataaagatactcacacagagtaccgtgttgcatgaactcataa 4652798  T
Q  218 acgagaatcat 228  Q
    || | ||||||    
T  4652799 accaaaatcat 4652809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 4671726 - 4671884
Alignment:
Q  25 ccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgccccc 124  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||  ||||||||||||||| || ||| || || || |||    
T  4671726 ccatttctcatccaacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataatttagccctctcgcagcaccc 4671825  T
Q  125 aacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagata 183  Q
    || ||||||||||| |||| | ||||||  || || || ||||  ||||||||||||||    
T  4671826 aatagaatctcaagcctctgcctccaaggtagtggctcgttattagaaccataaagata 4671884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 4660888 - 4661095
Alignment:
Q  23 acccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgccc 122  Q
    |||||||| | |||||||||||||||||| ||||| ||||| |||||||| || ||||| || ||  |||||||||||||||| ||||| |||||||  |    
T  4660888 acccatttgtgatccaacaatatgttggtgctctttacgtcgcggtgtattattttgtgtttcacctcagcatgaagataatgcaaccctcttgctgaac 4660987  T
Q  123 ccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgag 222  Q
    |||| || |||||||| || | | ||||||  || || |  ||||  |||||||||||||  || | |||||| || || |||||||| |||||||| ||    
T  4660988 ccaataggatctcaagcctttgcctccaaggtaggggctggttattagaaccataaagatgctcgcagagagtaccgcgctgcatgaattcataaaccag 4661087  T
Q  223 aatcatct 230  Q
    ||||||||    
T  4661088 aatcatct 4661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 4629993 - 4630201
Alignment:
Q  23 acccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgccc 122  Q
    |||||||| |||||||||| ||||||||| ||||| |||||||| ||||| || |||||||| ||  ||| |||||||||||  | ||| || ||||| |    
T  4629993 acccatttctcatccaacagtatgttggtgctctttacgtcacgatgtattatcttgtgcttcacctcagaatgaagataattcagccctctcgctgcac 4630092  T
Q  123 ccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgag 222  Q
    |||| || |||||||| |||| |||||| |  || || | |||||  |||||||| ||||| || | |||||| ||  | |||||||| |||||||| ||    
T  4630093 ccaataggatctcaagcctctgcttccatggtaggggctgattattggaaccatacagatactcgcagagagtaccgtgctgcatgaactcataaaccag 4630192  T
Q  223 aatcatctc 231  Q
    |||||||||    
T  4630193 aatcatctc 4630201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 4635943 - 4636149
Alignment:
Q  25 ccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgccccc 124  Q
    |||||| |||||||||||||||||||| ||||| |||||||| ||||| || ||||  || ||  ||| |||||||||||  | ||| || ||||| |||    
T  4635943 ccatttctcatccaacaatatgttggtgctctttacgtcacgatgtattatcttgtttttaacctcagtatgaagataattcagccctctagctgcaccc 4636042  T
Q  125 aacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaa 224  Q
    || ||||| ||||| |||| |||||| |  || ||||  ||||  |||||||||||||| || | |||||| ||  | |||||||| ||||| || ||||    
T  4636043 aaaagaatttcaagcctctgcttccatggtaggggttggttattagaaccataaagatactcgcagagagtaccgtgctgcatgaactcatagaccagaa 4636142  T
Q  225 tcatctc 231  Q
    |||||||    
T  4636143 tcatctc 4636149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 18926775 - 18926563
Alignment:
Q  19 agccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgct 118  Q
    |||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||| || ||||| || ||  |||||||||||||||  | ||| |||||     
T  18926775 agccacccatttctcatccaataatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcg 18926676  T
Q  119 gcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaa 218  Q
    || ||||| | ||||||||| || | |||||||   || ||||  ||||  |||||||| ||||| ||||  ||||| |||||||||||||| |||||||    
T  18926675 gcacccaatacaatctcaagcctttgcttccaaagtaggggttggttattggaaccatatagatactcacaaagagtaccacgttgcatgaactcataaa 18926576  T
Q  219 cgagaatcatctc 231  Q
      |||||||||||    
T  18926575 tcagaatcatctc 18926563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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