View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_high_2 (Length: 330)
Name: NF10258_high_2
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 120 - 320
Target Start/End: Complemental strand, 51454545 - 51454345
Alignment:
| Q |
120 |
attatcgccgccgcatctttagcggagaatgaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttt |
219 |
Q |
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| T |
51454545 |
attatcgccgccgcagctttagcggagaatgaatccctagctgcaatgtcatcaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttt |
51454446 |
T |
|
| Q |
220 |
tggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454445 |
tggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttc |
51454346 |
T |
|
| Q |
320 |
a |
320 |
Q |
| |
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| |
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| T |
51454345 |
a |
51454345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 51478697 - 51478527
Alignment:
| Q |
150 |
gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
249 |
Q |
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| T |
51478697 |
gaatccttagctgccatgctatcagcttcaacagaaccatcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgttttcctc |
51478598 |
T |
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| Q |
250 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttca |
320 |
Q |
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| T |
51478597 |
gatcaggaacagattcttcagctacttccaccacgtcatcacgttcatcgtccttcaacgacgccgtttca |
51478527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 51474482 - 51474327
Alignment:
| Q |
165 |
atgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagatt |
264 |
Q |
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| T |
51474482 |
atgtcatcagcttcaacggaaccttcatcgtccgatgacaacaacaccactgctttggcgccaacatccatagtttgtttttctcgatcaggaacatatt |
51474383 |
T |
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| Q |
265 |
cttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttca |
320 |
Q |
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| T |
51474382 |
cttcagctgctgctgccacatcatcaccttcaccgtcattcaacgacactgtttca |
51474327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51454664 - 51454623
Alignment:
| Q |
1 |
caccttcaccagcttcttcctttgttctgttccctaacaacg |
42 |
Q |
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| T |
51454664 |
caccttcaccagcttcttcctttgttctgttccctaacaacg |
51454623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 43159896 - 43159816
Alignment:
| Q |
188 |
ttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttc |
268 |
Q |
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| T |
43159896 |
ttcatcgtccgtcaacagcaactccaccgtattggcgccaacattcatagcttgtttttcttgatcaggaacagattcttc |
43159816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 43159745 - 43159692
Alignment:
| Q |
222 |
gcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgct |
275 |
Q |
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| T |
43159745 |
gcgccaacattcatagcttgtttatcttgatcaggaacagactcttctgctgct |
43159692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 310
Target Start/End: Complemental strand, 18079091 - 18078931
Alignment:
| Q |
150 |
gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
249 |
Q |
| |
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|||||| ||||||| |||||| || ||||||| ||||||||||||||| || ||| | || |||| |||||||||||| | ||| ||||||||||||| |
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| T |
18079091 |
gaatccttagctgccatgtcatcagcttcaacagaaccttcatcgtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgtttttctc |
18078992 |
T |
|
| Q |
250 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacga |
310 |
Q |
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| T |
18078991 |
gatcaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
18078931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 313
Target Start/End: Complemental strand, 18077186 - 18077023
Alignment:
| Q |
150 |
gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
249 |
Q |
| |
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|||||| ||||| | |||||| || ||||||| |||||||||||||| | ||| | |||||| || ||||||||||||| ||| | ||||||||||| |
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| T |
18077186 |
gaatccttagcttccatgtcatcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctc |
18077087 |
T |
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| Q |
250 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgc |
313 |
Q |
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|| |||||| |||||| |||||||| || |||| ||||||| |||| | || ||||||||||| |
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| T |
18077086 |
gaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacgacgc |
18077023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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