View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_high_3 (Length: 329)
Name: NF10258_high_3
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 32810568 - 32810879
Alignment:
| Q |
1 |
agagtaattatgtagaacaagaacatacacggagaatagctatagcggcagtttaatcagcagaggtatgccatctctaaccagtaactactgaccaatt |
100 |
Q |
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| T |
32810568 |
agagtaattatgtagaacaagaacatacacggagaatagctatagcggcagtttaatcagcagaggtatgccatctctaaccagtaactactgaccaatt |
32810667 |
T |
|
| Q |
101 |
ttgattgcatacacgcaatatttcccccactttcagaacaatggaactnnnnnnntaggtcagttttgatttcttattc----nnnnnnnnnnggaaact |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
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| T |
32810668 |
ttgattgcatacacgcaatatttcccccactttcagaacaatggaactaaaaaaataggtcagttttgatttattattcatttttttttttttggaaact |
32810767 |
T |
|
| Q |
197 |
tgatatttggcccaaggaccaaccagtccggggattcaatcccaccgtccactagctaggggccgaattgaatctagagtatggattgacccaacatagg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32810768 |
tgatatttggcccaaggaccaaccagtccggggattcaatcccaccgtccactagctaggggccgaattgaatctagagtatggattgacccaacatagg |
32810867 |
T |
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| Q |
297 |
aagtgttgacac |
308 |
Q |
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|||||||||||| |
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| T |
32810868 |
aagtgttgacac |
32810879 |
T |
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