View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_10 (Length: 331)
Name: NF10258_low_10
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 32180634 - 32180324
Alignment:
| Q |
10 |
acatctttaatgagaagtgtcggataatgttactgagaccttcatagttttgtgcttgtaaaatttaaaacagttcaaattttaactaatgaaattctcg |
109 |
Q |
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| T |
32180634 |
acatctttaatgagaagtgtcagataatgttactgaggccttcatagttttgtgcttgtaaaatttaaaacagttcaaattttaactaatgaaattctca |
32180535 |
T |
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| Q |
110 |
tcatgtaacagttcatgctggtggcaaagagcaactacatcagaaaactgataatggaatcaaacgaatccgaactcaccagattagacctctccgacat |
209 |
Q |
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| T |
32180534 |
acatgtaacagttcatgctggtggcaaagagcaactacatcagaaagctgataatggaatcaaacgaatccgaactcaccagattagacctctccgacat |
32180435 |
T |
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| Q |
210 |
ccccggcggccaagaagcttttgagaaagcagctaaattctgttacggcgtcaactttgagataaccgtcaacaacgtcgcgtcgttgcactgcgccgcc |
309 |
Q |
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| T |
32180434 |
ccccggcggccaagaagcttttgagaaagcagctaaattctgttacggcgtcaacttcgagataaccgtcaacaacgtcgcgtcgttgcactgcgccgcg |
32180335 |
T |
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| Q |
310 |
atgttccttca |
320 |
Q |
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||||||||||| |
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| T |
32180334 |
atgttccttca |
32180324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 28250921 - 28250764
Alignment:
| Q |
118 |
cagttcatgctggtggcaaagagcaactacatcagaaaactgataatggaatcaaacgaatccgaactcaccagattagacctctccgacatccccggcg |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | || | | ||||||||| |||| ||||| ||||| || || | |
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| T |
28250921 |
cagttcatgttggtggcaaagagcaactacatcagaaaactaataatggaatcagatgagactcatctcaccagaatagatctctctgacataccaggag |
28250822 |
T |
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| Q |
218 |
g-ccaagaagcttttgagaaagcagctaaattctgttacggcgtcaactttgagataac |
275 |
Q |
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| T |
28250821 |
gttctggaatc-tttgaaaaagcagctaaattctgttatggcgtcaacttcgagataac |
28250764 |
T |
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