View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_13 (Length: 324)
Name: NF10258_low_13
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 3592917 - 3592608
Alignment:
| Q |
11 |
cataggaataggtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
110 |
Q |
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| T |
3592917 |
cataggaataagtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
3592818 |
T |
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| Q |
111 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataactaacctatggacat |
210 |
Q |
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| T |
3592817 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataactaacctatggacat |
3592718 |
T |
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| Q |
211 |
tagacactaaactaccatgtgttaacaaatcannnnnnnnatatttttatatcaaagcaatggtttaaaacctgaactggacatcgaacaggtgagactt |
310 |
Q |
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|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592717 |
tagaaactaaactaccatgtgttaacaaatcattttt----tttttttatatcaaagcaatggtttaaaacctgaactggacatcgaacaggtgagactt |
3592622 |
T |
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| Q |
311 |
ctagatcatgattc |
324 |
Q |
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|||||||||||||| |
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| T |
3592621 |
ctagatcatgattc |
3592608 |
T |
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