View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10258_low_15 (Length: 317)
Name: NF10258_low_15
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 49 - 301
Target Start/End: Original strand, 40773092 - 40773345
Alignment:
| Q |
49 |
ctgtcattgcaccaataaaatgtagtggttcatagtgaagcaactaggcaataaaaagaatagttaaaattaaaactataaaataatcgaagtggctatg |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
40773092 |
ctgtcattgcaccaataaaatgtagtgtttcatagtgaagcaactaggcaataaaaagaatagtttatattaaaactataaaataatcgaagtggctaag |
40773191 |
T |
|
| Q |
149 |
nnnnnnn-ctattactttagagaagtaatgcagaaactaatatctgcttcattagcagattcaccacagccacaaaatgtagatgttaatacatcatcag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40773192 |
ttttttttctattactttagagaagtaatgcagaaactaacatctgcttcattagcagattcaccacagccacaaaatgtagatgttaatacatcatcag |
40773291 |
T |
|
| Q |
248 |
taatgcagaaagtagtatctactataggatcagaacaaactgctgccacaaaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40773292 |
taatgcagaaagtagtatctactataggatcagaacaaactgctgccacaaaat |
40773345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 40780619 - 40780677
Alignment:
| Q |
173 |
taatgcagaaactaatatctgcttcattagcagattcaccacagccacaaaatgtagatg |
232 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
40780619 |
taatgcacaaactaata-ctacttaattagcagattcactacagccacaaaatgtagatg |
40780677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40773042 - 40773075
Alignment:
| Q |
1 |
taccctcaacagttgatattttgtccaaggtgtt |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40773042 |
taccctcaacagttgatattttgtccaaggtgtt |
40773075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University