View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10258_low_16 (Length: 293)

Name: NF10258_low_16
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10258_low_16
NF10258_low_16
[»] scaffold0384 (2 HSPs)
scaffold0384 (134-277)||(5331-5480)
scaffold0384 (11-83)||(5206-5278)
[»] scaffold0079 (3 HSPs)
scaffold0079 (134-203)||(7661-7730)
scaffold0079 (11-83)||(7545-7617)
scaffold0079 (224-277)||(7725-7778)
[»] chr4 (2 HSPs)
chr4 (34-83)||(9511071-9511120)
chr4 (139-184)||(9510975-9511020)
[»] chr2 (8 HSPs)
chr2 (34-83)||(29284520-29284569)
chr2 (34-83)||(29305900-29305949)
chr2 (134-184)||(29285644-29285694)
chr2 (134-184)||(29305997-29306047)
chr2 (34-83)||(29282536-29282585)
chr2 (34-83)||(29285740-29285789)
chr2 (134-184)||(29284615-29284665)
chr2 (134-184)||(29307028-29307078)
[»] chr8 (1 HSPs)
chr8 (143-184)||(17844781-17844822)
[»] chr3 (1 HSPs)
chr3 (46-83)||(34106337-34106374)
[»] chr1 (1 HSPs)
chr1 (156-184)||(12499997-12500025)


Alignment Details
Target: scaffold0384 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 134 - 277
Target Start/End: Original strand, 5331 - 5480
Alignment:
Q  134 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatccatgtaaaaacgggtacggtttggtacgtacg------gtaactagtac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      |||||| ||||    
T  5331 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatccaagtaaaaacgggtacggtttggtacgtacggtatgcgtaactggtac 5430  T
Q  228 gggtgggtatgcatgcttcagagcagaggacagacaaaacagccaaaaaa 277  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  5431 ggctgggtatgcatgcttcagagcataggacagacaaaacagccaaaaaa 5480  T

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Target: scaffold0384; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 5206 - 5278
Alignment:
Q  11 caaaggtacgggtgcattgataataaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5206 caaaggtatgggtagattgataataaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 5278  T

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Target: scaffold0079 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 7661 - 7730
Alignment:
Q  134 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatccatgtaaaaacgggtacgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7661 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatccaagtaaaaacgggtacgg 7730  T

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Target: scaffold0079; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 7545 - 7617
Alignment:
Q  11 caaaggtacgggtgcattgataataaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  7545 caaaggtacgggtacattgataataaaacgtcaagaaaaagattttccaagagagttactaacattgttgttg 7617  T

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Target: scaffold0079; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 7725 - 7778
Alignment:
Q  224 gtacgggtgggtatgcatgcttcagagcagaggacagacaaaacagccaaaaaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7725 gtacgggtgggtatgcatgcttcagagcagaggacagacaaaacagccaaaaaa 7778  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 9511120 - 9511071
Alignment:
Q  34 taaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  9511120 taaaacgtcaagaaaaagattttccaagtgagttaatacaattgttgttg 9511071  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 9511020 - 9510975
Alignment:
Q  139 atactatttgtaattcaatcatgtgtttaaccacacttctatcatc 184  Q
    |||||||| |||||| ||||| || |||||||||||||||||||||    
T  9511020 atactattcgtaattgaatcacgtctttaaccacacttctatcatc 9510975  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 29284520 - 29284569
Alignment:
Q  34 taaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  29284520 taaaacgtcaagaaaaagatttttcaagtgagttaatacaattgttgttg 29284569  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 29305900 - 29305949
Alignment:
Q  34 taaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  29305900 taaaacatcaagaaaaagattttccaagtgagttaatacaattgttgttg 29305949  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 29285694 - 29285644
Alignment:
Q  134 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatc 184  Q
    |||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  29285694 gtataatactattcgtaattgaatcacgtgtttaaccacacttctatcatc 29285644  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 29305997 - 29306047
Alignment:
Q  134 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatc 184  Q
    |||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  29305997 gtataatactattcgtaattgaatcacgtgtttaaccacacttctatcatc 29306047  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 29282585 - 29282536
Alignment:
Q  34 taaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    |||||||||||||||| |||||| ||||||||||| ||| ||||||||||    
T  29282585 taaaacgtcaagaaaaggatttttcaagtgagttaatacaattgttgttg 29282536  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 29285789 - 29285740
Alignment:
Q  34 taaaacgtcaagaaaaagattttccaagtgagttactaccattgttgttg 83  Q
    |||||| |||||||||||||||||||||||||||| ||| | ||||||||    
T  29285789 taaaacctcaagaaaaagattttccaagtgagttaatacaagtgttgttg 29285740  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 29284615 - 29284665
Alignment:
Q  134 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatc 184  Q
    |||| |||||||| | |||| ||||| ||||||||||||||||||||||||    
T  29284615 gtataatactattcgaaattgaatcacgtgtttaaccacacttctatcatc 29284665  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 29307078 - 29307028
Alignment:
Q  134 gtatcatactatttgtaattcaatcatgtgtttaaccacacttctatcatc 184  Q
    |||| ||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  29307078 gtataatactattcttaattgaatcacgtgtttaaccacacttctatcatc 29307028  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 17844781 - 17844822
Alignment:
Q  143 tatttgtaattcaatcatgtgtttaaccacacttctatcatc 184  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  17844781 tatttgtaatttaatcatgtgtttaaccacacttccatcatc 17844822  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 34106374 - 34106337
Alignment:
Q  46 aaaaagattttccaagtgagttactaccattgttgttg 83  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  34106374 aaaaatattttccaagtgaattactaccattgttgttg 34106337  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 12500025 - 12499997
Alignment:
Q  156 atcatgtgtttaaccacacttctatcatc 184  Q
    |||||||||||||||||||||||||||||    
T  12500025 atcatgtgtttaaccacacttctatcatc 12499997  T

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