View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_17 (Length: 291)
Name: NF10258_low_17
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_17 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 13499899 - 13500178
Alignment:
| Q |
12 |
aacctgtgatgaaggaatttcaatctgcgcagcacagtagttacattcaatgaaatcgcttggcactggtggaactgtataacaaaatatcgtagacaat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13499899 |
aacctgtgatgaaggaatttcaatctgcgcagcacagtagttacattcaataaaatcgcttggcactggtggaactgtataacaaaatatcgtagacaat |
13499998 |
T |
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| Q |
112 |
aacaaattgttgagtaacttcaataccactggaaaaactaatcaagcacagtaaactgaagaaattaagtacctgactcttttgacgctctcctaatgca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13499999 |
aacaaattgttgagtaacttcaataccactggaaaaactaatcaagcacagtaaactgaagaaattaagtacctgactcttttgacgctctcctaatgca |
13500098 |
T |
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| Q |
212 |
gatcccactgacaactgggcttccatttaaactctcaaatcttatgagaatcaacccatcatcctttacagtggcccgac |
291 |
Q |
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| T |
13500099 |
gatcccactgacaactgggcttccatttaaactctcaaatcttatgagaatcaccccatcatccttcacagtggcccgac |
13500178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 21797951 - 21797672
Alignment:
| Q |
12 |
aacctgtgatgaaggaatttcaatctgcgcagcacagtagttacattcaatgaaatcgcttggcactggtggaactgtataacaaaatatcgtagacaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21797951 |
aacctgtgatgaaggaatttcaatctgcgcagcacagtagttacattcaatgaaatcgcttggcactggtggaactgtataacaaaatatcgtagacaat |
21797852 |
T |
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| Q |
112 |
aacaaattgttgagtaacttcaataccactggaaaaactaatcaagcacagtaaactgaagaaattaagtacctgactcttttgacgctctcctaatgca |
211 |
Q |
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| T |
21797851 |
aacaaattgttgagtaacttcaataccactggaaaaactaatcaagcacagtaaactgaagaaattaagtacctgactcttttgacgctctcctaatgca |
21797752 |
T |
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| Q |
212 |
gatcccactgacaactgggcttccatttaaactctcaaatcttatgagaatcaacccatcatcctttacagtggcccgac |
291 |
Q |
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| T |
21797751 |
gatcccactgacaactggtcttccatttaaactctcaaatcttatgagaatcaccccatcatccttcacagtggcccgac |
21797672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 21718213 - 21717934
Alignment:
| Q |
12 |
aacctgtgatgaaggaatttcaatctgcgcagcacagtagttacattcaatgaaatcgcttggcactggtggaactgtataacaaaatatcgtagacaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21718213 |
aacctgtgatgaaggaatttcaatctgcgcagcacagtagttacattcaatgaaatcgcttggcactggtggaactgtataacaaaatatcgtagacaat |
21718114 |
T |
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| Q |
112 |
aacaaattgttgagtaacttcaataccactggaaaaactaatcaagcacagtaaactgaagaaattaagtacctgactcttttgacgctctcctaatgca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21718113 |
aacaaattgttgagtaacttcaataccactggaaaaactaatcaagcacagtaaactgaagaaattaagtacctgactcttttgacgctctcctaatgca |
21718014 |
T |
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| Q |
212 |
gatcccactgacaactgggcttccatttaaactctcaaatcttatgagaatcaacccatcatcctttacagtggcccgac |
291 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
21718013 |
gatcccactgacaattggtcttccatttaaactctcaaatcttatgagaatcaccccatcatccttcacagtggcccgac |
21717934 |
T |
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