View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10258_low_19 (Length: 272)

Name: NF10258_low_19
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10258_low_19
NF10258_low_19
[»] chr2 (3 HSPs)
chr2 (11-256)||(13449012-13449257)
chr2 (11-256)||(13440849-13441094)
chr2 (11-200)||(13455483-13455672)
[»] chr7 (1 HSPs)
chr7 (14-256)||(3416821-3417057)
[»] chr5 (1 HSPs)
chr5 (124-256)||(28386099-28386231)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 13449012 - 13449257
Alignment:
Q  11 caaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccatt 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13449012 caaaggaacttgaatccgaatcagaatctgtctgagacttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaaggcacaatccatt 13449111  T
Q  111 gaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13449112 gaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaa 13449211  T
Q  211 tccccaataggttctttaaggagcatcgcgccagtgtggatcttcc 256  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13449212 tccccaataggttctttaaggagcatcgcgccagtatggatcttcc 13449257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 13440849 - 13441094
Alignment:
Q  11 caaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccatt 110  Q
    ||||||||||||||||| |||||||||  || | |||   |||||| ||||||| || ||||| || |||||| ||||| | ||||||  ||||||||||    
T  13440849 caaaggaacttgaatccaaatcagaattagtatcagaatgaagtaagttgtttgcttggagggattccacgagagagacggtaaaaagtgacaatccatt 13440948  T
Q  111 gaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaa 210  Q
    |||||||| |||||||||||||| |||||  |||||||||||| ||||||| || | ||||||||||||||||||||| |||||||| ||||| ||||||    
T  13440949 gaatgtgaggtttgggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaa 13441048  T
Q  211 tccccaataggttctttaaggagcatcgcgccagtgtggatcttcc 256  Q
    ||| |||| | | | |  |||||||| ||||||  |||||||||||    
T  13441049 tcctcaatggatccatggaggagcattgcgccacggtggatcttcc 13441094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 13455483 - 13455672
Alignment:
Q  11 caaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccatt 110  Q
    |||||| |||||||||||||||| ||| ||| | |||   |||||||||||||||||||||||| | ||  |||||||| ||||||||||||| ||| ||    
T  13455483 caaaggtacttgaatccgaatcaaaatttgtatcagaatgaagtaaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgtt 13455582  T
Q  111 gaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcatt 200  Q
     ||||||||||| || ||||||||||||| ||||||||||||||||||||| || |  | |||||||||||||||||| || ||||||||    
T  13455583 aaatgtgatgttaggaatctgaaacttatgggccaagtcattaacccatgggtatgcagcgtcggagatgatacaatctgggggatcatt 13455672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 3417057 - 3416821
Alignment:
Q  14 aggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaa 113  Q
    ||||||||||||||||||||||||| ||       | ||||||||| |||||| | |||| || || |||  |||| | ||||| | ||||  ||||| |    
T  3417057 aggaacttgaatccgaatcagaatccgta------aaaagtaaattatttgttctaagggattccatgagcaagactggaaaaacggacaaaacattgta 3416964  T
Q  114 tgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatcc 213  Q
    |||||  || ||||| |||| ||| | ||||||||||||||||||||| || |  |||||||||||||||||||| |||||||| || | ||||||||||    
T  3416963 tgtgaaattagggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcc 3416864  T
Q  214 ccaataggttctttaaggagcatcgcgccagtgtggatcttcc 256  Q
     |||| |||   |  |||||||| |||||| ||| ||||||||    
T  3416863 tcaatgggtcgatggaggagcattgcgccattgttgatcttcc 3416821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 256
Target Start/End: Original strand, 28386099 - 28386231
Alignment:
Q  124 gggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt 223  Q
    ||||| |||| ||| | ||||||||||||| ||||||   | | |||||| |  || ||||||||||||||||  ||||||| |||||||||||  | ||    
T  28386099 gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgctt 28386198  T
Q  224 ctttaaggagcatcgcgccagtgtggatcttcc 256  Q
    | || |||||||| |||||| | ||||||||||    
T  28386199 cattgaggagcattgcgccattatggatcttcc 28386231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University