View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_2 (Length: 592)
Name: NF10258_low_2
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_2 |
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| [»] scaffold0617 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 654983 - 655564
Alignment:
| Q |
1 |
tttgctgcacaccaatgttcctcagttggagatgacatatatctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
654983 |
tttgctgcacaccaatgttcctcagttggagatgacatatatctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatca |
655082 |
T |
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| Q |
101 |
agcttccaacaacttgcttgaacatggttgaatcgatcttggttcccttctcatccttgaaaagccttgttcctggtacaataggatttccaactggttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
655083 |
agcttccaacaacttgcttgaacatggttgaatcgatcttggttcccttctcatccttggaaagccttgtgcctggtacaataggatttccaactggttt |
655182 |
T |
|
| Q |
201 |
gctatcagacatgccaaaccttgccagcacttctctcgcatactttctttgacacataaatattccctttgaattatgtataatttccatgccaagaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
655183 |
gctatcagacatgccaaaccttgccagcacttctctcgcatactttctttgacacataaatattccctttgaattctgtataatttccatgccaagaaaa |
655282 |
T |
|
| Q |
301 |
tagctcatctttaccacgacctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatca |
400 |
Q |
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| T |
655283 |
tagctcatctttccca-aatctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatca |
655381 |
T |
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| Q |
401 |
tcaacgtaaagactgacaattaggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagt |
500 |
Q |
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| T |
655382 |
tcaacgtaaagactgacaattaggattttacctctctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagt |
655481 |
T |
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| Q |
501 |
aggattctatgcgactggaccatgctcgcggagcctgtttcagtccgtctgaagctttatttagcttatatacctttgcttct |
583 |
Q |
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| T |
655482 |
aggattctatgcgactgtaccatgctcgcggagcctgtttcagtccgtataaagctttatttagcttatataccttttcttct |
655564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 14247327 - 14247246
Alignment:
| Q |
43 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
124 |
Q |
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| T |
14247327 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
14247246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 435
Target Start/End: Complemental strand, 14247031 - 14246936
Alignment:
| Q |
340 |
catcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
435 |
Q |
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| T |
14247031 |
catcattgagtttttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
14246936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 510
Target Start/End: Complemental strand, 11850614 - 11850427
Alignment:
| Q |
323 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
422 |
Q |
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| T |
11850614 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcccggtatatattaaatcatctacataaagacttactatta |
11850515 |
T |
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| Q |
423 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
510 |
Q |
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| T |
11850514 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
11850427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 655 - 736
Alignment:
| Q |
43 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
124 |
Q |
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| T |
655 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 6099 - 6180
Alignment:
| Q |
43 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
124 |
Q |
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| T |
6099 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
6180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 964 - 1046
Alignment:
| Q |
353 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
435 |
Q |
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| T |
964 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
1046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 6408 - 6490
Alignment:
| Q |
353 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
435 |
Q |
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| T |
6408 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
6490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 510
Target Start/End: Complemental strand, 5877310 - 5877123
Alignment:
| Q |
323 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
422 |
Q |
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| T |
5877310 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcctggtatatattaaatcatctacataaacacttactatta |
5877211 |
T |
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| Q |
423 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
510 |
Q |
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| T |
5877210 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
5877123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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