View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_20 (Length: 270)
Name: NF10258_low_20
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 86 - 270
Target Start/End: Complemental strand, 55933850 - 55933664
Alignment:
| Q |
86 |
gtatatgtatgtccacattgagttatctagaacagtccctagtactttgctatgcccaataaagaaaaaggtacttggctactttttcaaaagaga--nn |
183 |
Q |
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| T |
55933850 |
gtatatgtatgtacacattgagttatctagaacagtccctagtactttgctatgcccaataaagaaaaaggtacttggctactttttcaaaagagatttt |
55933751 |
T |
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| Q |
184 |
nnnnnnnnagaaattcaaaagaggttaagtaatttaatatcaatattacttgcacacaaagaggaggcaagcggataacaaactgcg |
270 |
Q |
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| T |
55933750 |
ttttttttagaaattcaaaagaggttaagtaatttaatatcaatattacttgcacatgaataggaggcaagcggacaacaaactgcg |
55933664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 55936773 - 55936716
Alignment:
| Q |
1 |
ggcgtgcactaaaaatactactgttgtagtattatgttttcattggacattaagttag |
58 |
Q |
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| T |
55936773 |
ggcgtgcactaaaaataccactgtagtagtattatgttttcattgaacattaagttag |
55936716 |
T |
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