View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10258_low_22 (Length: 254)

Name: NF10258_low_22
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10258_low_22
NF10258_low_22
[»] chr1 (3 HSPs)
chr1 (29-237)||(51620522-51620725)
chr1 (110-239)||(2981301-2981431)
chr1 (17-65)||(2981468-2981516)
[»] chr8 (3 HSPs)
chr8 (17-207)||(13431588-13431776)
chr8 (146-239)||(6107668-6107761)
chr8 (110-204)||(6228848-6228943)
[»] chr2 (2 HSPs)
chr2 (17-208)||(16494350-16494533)
chr2 (29-65)||(40598975-40599011)
[»] chr7 (2 HSPs)
chr7 (87-237)||(48498200-48498349)
chr7 (17-71)||(48498133-48498187)
[»] chr3 (1 HSPs)
chr3 (153-239)||(41701255-41701341)
[»] chr4 (2 HSPs)
chr4 (29-65)||(4780135-4780171)
chr4 (29-65)||(6922349-6922385)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 51620725 - 51620522
Alignment:
Q  29 ggtgggagacttcaataggtctcctaccataagagacttcaatannnnnnnnnnnnnnaagcttaaatgacctgnnnnnnngcaggttaggtacattatt 128  Q
    |||||||||||||||||||||||||||||| |||||||||||||              ||||||||||||||||       |||||||||||||||||||    
T  51620725 ggtgggagacttcaataggtctcctaccatgagagacttcaatattttttttt-----aagcttaaatgacctgtttttttgcaggttaggtacattatt 51620631  T
Q  129 tacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattacaggtatagtataggaaattcata 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  51620630 tacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattacagggacaatataggaaattcata 51620531  T
Q  229 ttttccttc 237  Q
    |||||||||    
T  51620530 ttttccttc 51620522  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 2981431 - 2981301
Alignment:
Q  110 gcaggttaggtacattatttacctattataaaagttaaaaag-atataaatgattcttataataatttcatacacattttaatggtatgaatattacagg 208  Q
    ||||||||||||||||  ||||||||||||  || ||||||| |||||||||||||||||||||| |||||  | ||||| |||||||||||||||||||    
T  2981431 gcaggttaggtacattccttacctattatagtaggtaaaaaggatataaatgattcttataataacttcatctaaattttgatggtatgaatattacagg 2981332  T
Q  209 tatagtataggaaattcatattttccttctt 239  Q
       ||||||||||||||||||||||||||||    
T  2981331 gtcagtataggaaattcatattttccttctt 2981301  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2981516 - 2981468
Alignment:
Q  17 ggtgtcgtttatggtgggagacttcaataggtctcctaccataagagac 65  Q
    |||| |||||| |||||||||||||| ||||||||||||| | ||||||    
T  2981516 ggtgccgtttaaggtgggagacttcattaggtctcctaccgtgagagac 2981468  T

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Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 13431776 - 13431588
Alignment:
Q  17 ggtgtcgtttatggtgggagacttcaataggtctcctaccataagagacttcaatannnnnnnnnnnnnnaagcttaaatgacctgnnnnnnn-gcaggt 115  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||               ||||||||||||||||        ||||||    
T  13431776 ggtgccgtttagggtgggagacttcaataggtctcctaccatgagagacttcaat---ttttttttttttaagcttaaatgacctgttttttttgcaggt 13431680  T
Q  116 taggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattacag 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13431679 taggtacattatttacctattataaaagtaaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattacag 13431588  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 6107761 - 6107668
Alignment:
Q  146 aaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattacaggtatagtataggaaattcatattttccttctt 239  Q
    |||||||||||||| ||||| |||||| ||||||  ||||||||||||||||||||||| | |   ||||||||||||||||||||||||||||    
T  6107761 aaaaagatataaataattctgataatagtttcatttacattttaatggtatgaatattatacggtcagtataggaaattcatattttccttctt 6107668  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 6228943 - 6228848
Alignment:
Q  110 gcaggttaggtacattatttacctattataaaagttaaaaa-gatataaatgattcttataataatttcatacacattttaatggtatgaatatta 204  Q
    ||||||| ||||||| | ||||||||| || ||| |||||| | ||||||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  6228943 gcaggtttggtacatcagttacctattgtagaaggtaaaaatggtataaataattcttgtaataatttcatttacattttaatggtatgaatatta 6228848  T

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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 16494350 - 16494533
Alignment:
Q  17 ggtgtcgtttatggtgggagacttcaataggtctcctaccataagagacttcaatannnnnnnnnnnnnnaagcttaaatgacctgnnnnnnngcaggtt 116  Q
    |||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||               ||||||||||||| ||       |||||||    
T  16494350 ggtgccgtttagggtgggagtcttcaataggtctcctaccatgagagacttcaat--------tttttttaagcttaaatgacatgtttttttgcaggtt 16494441  T
Q  117 aggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattacagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16494442 aggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcttacacattttaatggtatgaatattacagg 16494533  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 40599011 - 40598975
Alignment:
Q  29 ggtgggagacttcaataggtctcctaccataagagac 65  Q
    |||||||||| |||||||||||||||||||| |||||    
T  40599011 ggtgggagacctcaataggtctcctaccataggagac 40598975  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 48498200 - 48498349
Alignment:
Q  87 aagcttaaatgacctgnnnnnnngcaggttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacatt 186  Q
    ||||||||||||||||       |||| ||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  48498200 aagcttaaatgacctgtttttttgcagattaggtacattatttacctattataa--gttaaaaagatataagtgattcttataataatttcatacacatt 48498297  T
Q  187 ttaatggtatgaatattaca-ggtatagtataggaaattcatattttccttc 237  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||||    
T  48498298 ttaatggtatgaatattacaggggacagtataggaaattcatattttccttc 48498349  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 48498133 - 48498187
Alignment:
Q  17 ggtgtcgtttatggtgggagacttcaataggtctcctaccataagagacttcaat 71  Q
    |||| |||||| |||||||||||||||||||||||||||  | ||||||||||||    
T  48498133 ggtgccgtttaaggtgggagacttcaataggtctcctacagtgagagacttcaat 48498187  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 41701341 - 41701255
Alignment:
Q  153 tataaatgattcttataataatttcatacacattttaatggtatgaatattacaggtatagtataggaaattcatattttccttctt 239  Q
    ||||||| |||||| ||||||||||||  |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  41701341 tataaataattcttttaataatttcatttacattttaatggtatgaatattacagggtcagtataggaaattcatattttccttctt 41701255  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 4780171 - 4780135
Alignment:
Q  29 ggtgggagacttcaataggtctcctaccataagagac 65  Q
    |||||||||| |||||||||||||||||||| |||||    
T  4780171 ggtgggagacctcaataggtctcctaccataggagac 4780135  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 6922349 - 6922385
Alignment:
Q  29 ggtgggagacttcaataggtctcctaccataagagac 65  Q
    |||||||||| |||||||||||||||||||| |||||    
T  6922349 ggtgggagacctcaataggtctcctaccataggagac 6922385  T

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