View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_27 (Length: 238)
Name: NF10258_low_27
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 25655716 - 25655922
Alignment:
| Q |
18 |
aaccacaacacataaaaaatctgaagaacatgtgtctcccactatagaaagatagcaaagagtgtatgtcaaggcggatatctaagagatatatcatact |
117 |
Q |
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| T |
25655716 |
aaccacaacacataaaaaatctgaagaacatgtgtctcccactatagaaagatagcaaagagtgtgtgtcaaagcgaatatctaagagatatatcatact |
25655815 |
T |
|
| Q |
118 |
atggctatatnnnnnnngataaaaatgtgtactgaacatatgtctgtagaatctggtcataactttgagagattagaaaactaatgtcaattaatgaata |
217 |
Q |
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|||||||||| |||||||| |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25655816 |
atggctatataaaaagagataaaaaaaatgcgtgaacacatgtctgtagaatctgctcataaccttgagagattagaaaactaatgtcaattaatgaata |
25655915 |
T |
|
| Q |
218 |
acctatg |
224 |
Q |
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||||||| |
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| T |
25655916 |
acctatg |
25655922 |
T |
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