View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10258_low_28 (Length: 237)

Name: NF10258_low_28
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10258_low_28
NF10258_low_28
[»] chr2 (2 HSPs)
chr2 (20-221)||(36648195-36648396)
chr2 (151-221)||(36614534-36614604)
[»] chr3 (3 HSPs)
chr3 (29-158)||(3067835-3067964)
chr3 (166-221)||(3068003-3068058)
chr3 (110-156)||(7615867-7615913)
[»] chr8 (4 HSPs)
chr8 (151-221)||(2188838-2188908)
chr8 (97-161)||(36361732-36361796)
chr8 (162-221)||(36361828-36361887)
chr8 (31-99)||(36361563-36361631)
[»] scaffold0565 (1 HSPs)
scaffold0565 (37-99)||(3761-3823)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 36648396 - 36648195
Alignment:
Q  20 cggtgcactattggtagacatgtaatttgaccattgttccttcctactccacggcatccaacatttgtaacactaaaaccataagctgaagggttgctta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  36648396 cggtgcactattggtagacatgtaatttgaccattgttccttcctactccacggcatccaacatttataacactaaaaccataagctgaagggttactta 36648297  T
Q  120 taatatcttgaaaaataccataagaatttacgtagataacttaacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcaca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36648296 taatatcttgaaaaataccataagaatttacgtagataacttaacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcaca 36648197  T
Q  220 ca 221  Q
    ||    
T  36648196 ca 36648195  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 36614604 - 36614534
Alignment:
Q  151 gtagataacttaacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcacaca 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36614604 gtagataacttaacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcacaca 36614534  T

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Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 3067835 - 3067964
Alignment:
Q  29 attggtagacatgtaatttgaccattgttccttcctactccacggcatccaacatttgtaacactaaaaccataagctgaagggttgcttataatatctt 128  Q
    |||||||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  3067835 attggtagacatataatttgaccatttttccttcctactccacaacatccaacatttgtaacactaaaatcataagctgaatgattgcttataatatctt 3067934  T
Q  129 gaaaaataccataagaatttacgtagataa 158  Q
    ||||||||||||||||||| ||||||||||    
T  3067935 gaaaaataccataagaattcacgtagataa 3067964  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 3068003 - 3068058
Alignment:
Q  166 agacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcacaca 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3068003 agacctttcaatttgttgttgaatatttggtttgttgaattgatttcttgcacaca 3068058  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 7615913 - 7615867
Alignment:
Q  110 gggttgcttataatatcttgaaaaataccataagaatttacgtagat 156  Q
    |||||| |||| |||||||||||||||||||||| |||||| |||||    
T  7615913 gggttgtttatgatatcttgaaaaataccataagtatttacatagat 7615867  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 2188838 - 2188908
Alignment:
Q  151 gtagataacttaacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcacaca 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188838 gtagataacttaacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcacaca 2188908  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 36361732 - 36361796
Alignment:
Q  97 accataagctgaagggttgcttataatatcttgaaaaataccataagaatttacgtagataactt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36361732 accataagctgaagggttgcttataatatcttgaaaaataccataagaatttacgtagataactt 36361796  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 36361828 - 36361887
Alignment:
Q  162 aacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttgcacaca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36361828 aacaagacctttcaatttgttgttgaatatttggtttgctgaattgatttcttccacaca 36361887  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 36361563 - 36361631
Alignment:
Q  31 tggtagacatgtaatttgaccattgttccttcctactccacggcatccaacatttgtaacactaaaacc 99  Q
    |||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  36361563 tggtagacatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaacactaaaacc 36361631  T

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Target: scaffold0565 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 3761 - 3823
Alignment:
Q  37 acatgtaatttgaccattgttccttcctactccacggcatccaacatttgtaacactaaaacc 99  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||||||||| ||||||||    
T  3761 acatgtaatttgaccattgtttcttcctacaccacagcatccagcatttgtaactctaaaacc 3823  T

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