View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10258_low_5 (Length: 402)
Name: NF10258_low_5
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10258_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 3592610 - 3592225
Alignment:
| Q |
1 |
ttcaaccgtcttgaaccgcccgtgatcgaactgccaaaataaccaaaccacaataaaagtcggttgaactgtccggttcgnnnnnnnn-aaggtttgata |
99 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3592610 |
ttcaaccgtgttgaaccgcccgtgatcgaactgccaaaataaccaaaccacaataaaagtcggttgaactgtccggttcgtttttttttaaggtttgata |
3592511 |
T |
|
| Q |
100 |
tcagaatcatcccaaggaacatttagatcagttgagaccaaagaatcaatatcctcccaactccaatagtttgacatatccattccactacttgttgcag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592510 |
tcagaatcatcccaaggaacatttagatcagttgagaccaaagaatcaatatcctcccaactccaatagtttgacatatccattccactacttgttgcag |
3592411 |
T |
|
| Q |
200 |
gtatctcccatggctgtgtaatagtgccactcccactagtgcttggcattgcactgttgttaatagttgactcctccattattttaaactcttcatcacc |
299 |
Q |
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| T |
3592410 |
gtatctcccatggctgtgtaatagtgccactaccactagtgcttggcattgcactgttgttaatagttgactcctccattattttaaactcttcatcacc |
3592311 |
T |
|
| Q |
300 |
atagttatatccattagttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggttttgatgaaagggcatagatg |
385 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592310 |
atagttatatccattatttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggttttgatgaaagggcatagatg |
3592225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 35722446 - 35722336
Alignment:
| Q |
89 |
aaggtttgatatcagaatcatcccaa---ggaacatttagatcagttgagaccaaagaatcaatatcctcccaactccaatagtttgacatatccattcc |
185 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||| || |||||| ||||||| ||||| | ||||| || |
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| T |
35722446 |
aaggtttgatatcagaatcatcccaataaggattctttagatcagttgaaaccaatgaatcaatgtcttcccaattccaatactttgaactttccatgcc |
35722347 |
T |
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| Q |
186 |
actacttgttg |
196 |
Q |
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|| |||||||| |
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| T |
35722346 |
accacttgttg |
35722336 |
T |
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