View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10258_low_6 (Length: 377)

Name: NF10258_low_6
Description: NF10258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10258_low_6
NF10258_low_6
[»] chr6 (42 HSPs)
chr6 (19-364)||(31283860-31284206)
chr6 (19-140)||(27678743-27678864)
chr6 (23-148)||(26655778-26655903)
chr6 (23-148)||(26761749-26761874)
chr6 (26-140)||(27706678-27706792)
chr6 (23-148)||(27725118-27725243)
chr6 (23-148)||(27611275-27611400)
chr6 (23-148)||(28786067-28786192)
chr6 (23-148)||(28792188-28792313)
chr6 (24-140)||(27338339-27338455)
chr6 (24-140)||(27399079-27399195)
chr6 (23-148)||(27229023-27229146)
chr6 (23-148)||(28780928-28781053)
chr6 (23-148)||(27718652-27718777)
chr6 (26-101)||(26622812-26622887)
chr6 (26-101)||(26728790-26728865)
chr6 (23-148)||(27698767-27698891)
chr6 (19-99)||(26861454-26861534)
chr6 (19-103)||(27593289-27593373)
chr6 (23-148)||(27604978-27605109)
chr6 (19-103)||(27677883-27677967)
chr6 (74-148)||(26823635-26823709)
chr6 (177-226)||(26802112-26802161)
chr6 (23-148)||(26802227-26802356)
chr6 (175-235)||(27531661-27531721)
chr6 (175-230)||(27725321-27725377)
chr6 (175-214)||(28785980-28786019)
chr6 (78-148)||(26055748-26055818)
chr6 (19-77)||(26884023-26884081)
chr6 (79-148)||(26048667-26048736)
chr6 (79-148)||(26069836-26069905)
chr6 (79-148)||(26075718-26075787)
chr6 (79-148)||(26142687-26142756)
chr6 (175-215)||(27338546-27338586)
chr6 (175-215)||(27399286-27399326)
chr6 (175-226)||(27586227-27586278)
chr6 (51-148)||(27427904-27427999)
chr6 (79-148)||(25538362-25538431)
chr6 (183-235)||(26655627-26655680)
chr6 (183-235)||(26761598-26761651)
chr6 (175-227)||(26055620-26055672)
chr6 (175-227)||(26075590-26075642)
[»] chr4 (11 HSPs)
chr4 (23-148)||(18699660-18699785)
chr4 (23-148)||(18655737-18655862)
chr4 (23-148)||(18731764-18731889)
chr4 (23-148)||(18679827-18679952)
chr4 (23-110)||(18724345-18724432)
chr4 (175-237)||(18699880-18699942)
chr4 (175-218)||(18724537-18724580)
chr4 (188-230)||(18655923-18655965)
chr4 (175-218)||(18680041-18680084)
chr4 (51-148)||(17989338-17989433)
chr4 (51-148)||(18073556-18073651)
[»] scaffold1254 (2 HSPs)
scaffold1254 (23-140)||(190-307)
scaffold1254 (175-214)||(398-437)
[»] scaffold0419 (2 HSPs)
scaffold0419 (23-140)||(7322-7439)
scaffold0419 (175-214)||(7192-7231)
[»] scaffold0349 (4 HSPs)
scaffold0349 (23-148)||(3695-3820)
scaffold0349 (23-148)||(8074-8199)
scaffold0349 (23-148)||(14628-14752)
scaffold0349 (175-230)||(3898-3954)
[»] scaffold0277 (2 HSPs)
scaffold0277 (23-148)||(4944-5069)
scaffold0277 (23-148)||(13905-14030)
[»] chr1 (4 HSPs)
chr1 (23-134)||(28164622-28164733)
chr1 (23-108)||(28127940-28128019)
chr1 (53-103)||(268647-268697)
chr1 (238-291)||(28128177-28128230)
[»] chr8 (1 HSPs)
chr8 (51-105)||(29274071-29274125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (51-148)||(59364-59459)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 31284206 - 31283860
Alignment:
Q  19 acttcccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatag 118  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31284206 acttcccctgaaactaaggaatacttggtatttgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagagaatatgg 31284107  T
Q  119 atgaagaaagagtttgagaatacagaa---tattaaatatcacataccaatgctacgtcaaacttcctggccacttgctatagccgtgtggaccaatcac 215  Q
    ||||||||||| ||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284106 atgaagaaagaatttgagaatgcagaatagtattaaatatcacataccaatgctacgtcaaacttcctggccacttgctatagccgtgtggaccaatcac 31284007  T
Q  216 acagtaaatatcattatactgcaatttctttaatgtgactactattaaacttttggacaaaacttaaataaataaacaagnnnnnnnnnnaaggaataaa 315  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          ||||||||||    
T  31284006 acagtaaatatcatt-tactgcaatttctttaatgtgactactattaaacttttggacaaaacttaaataaataaataag-ttttttttgaaggaataaa 31283909  T
Q  316 taaacaagttaaaaaccaaataatagtgaattaataaacgtttttgcct 364  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31283908 taaacaagttaaaaaccaaataatagtgaattaataaatgtttttgcct 31283860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 27678864 - 27678743
Alignment:
Q  19 acttcccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatag 118  Q
    |||||| |||||||| ||||| |||||||||||| |  ||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||  |||    
T  27678864 acttcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagattttagagaaattag 27678765  T
Q  119 atgaagaaagagtttgagaata 140  Q
    ||||| ||||||||||||||||    
T  27678764 atgaaaaaagagtttgagaata 27678743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 26655903 - 26655778
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||||| || |||||||||| | ||||||| ||||||| |||||| |||||||||||| ||||||||| || |||||    
T  26655903 cccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatga 26655804  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | |||||||||| |||| ||||||||    
T  26655803 aaaaagagtttgggaatgcagaatat 26655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 26761874 - 26761749
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||||| || |||||||||| | ||||||| ||||||| |||||| |||||||||||| ||||||||| || |||||    
T  26761874 cccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatga 26761775  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | |||||||||| |||| ||||||||    
T  26761774 aaaaagagtttgggaatgcagaatat 26761749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 27706678 - 27706792
Alignment:
Q  26 ctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaaga 125  Q
    |||||||| ||||| |||||||||||| |  ||||||||||| ||| ||||||| ||| |||||||||||||||||||||| ||||||  |||||||| |    
T  27706678 ctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagagaaaggtgattgcatagccatgagattttagagaaattagatgaaaa 27706777  T
Q  126 aagagtttgagaata 140  Q
    |||||||||||||||    
T  27706778 aagagtttgagaata 27706792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 27725118 - 27725243
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatata-gatg 121  Q
    ||||| ||||||||||||||||||||  ||||||||||||||| | ||||||| ||||||| |||||| |||||||||| | ||||||||| ||| ||||    
T  27725118 cccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaa-ataggatg 27725216  T
Q  122 aagaaagagtttgagaatacagaatat 148  Q
    || ||||||||||||||| ||||||||    
T  27725217 aaaaaagagtttgagaatgcagaatat 27725243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 27611275 - 27611400
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||| | |||| |||||||||| | ||||||||||||||| | |||||||||  | |||||    
T  27611275 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatga 27611374  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  27611375 aaaaagagtttgagaatgcagaatat 27611400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 28786192 - 28786067
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||| | ||||||| ||||||| |||||| |||||||| ||| |||||||||  | |||||    
T  28786192 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatga 28786093  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  28786092 aaaaagagtttgagaattcagaatat 28786067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 28792313 - 28792188
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||| | ||||||| ||||||| |||||| |||||||| ||| |||||||||  | |||||    
T  28792313 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatga 28792214  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  28792213 aaaaagagtttgagaattcagaatat 28792188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 27338339 - 27338455
Alignment:
Q  24 ccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaa 123  Q
    |||| ||||| |||||||| ||||||||||| ||| |||||||| ||||||||||||||  ||||||||||||||||||| |||||||||   |||||||    
T  27338339 ccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaa 27338438  T
Q  124 gaaagagtttgagaata 140  Q
     ||| ||||||||||||    
T  27338439 aaaaaagtttgagaata 27338455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 27399079 - 27399195
Alignment:
Q  24 ccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaa 123  Q
    |||| ||||| |||||||| ||||||||||| ||| |||||||| ||||||||||||||  ||||||||||||||||||| |||||||||   |||||||    
T  27399079 ccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaa 27399178  T
Q  124 gaaagagtttgagaata 140  Q
     ||| ||||||||||||    
T  27399179 aaaaaagtttgagaata 27399195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 27229146 - 27229023
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||||||||||||||||||  |||||||| |||||| | ||||||||||||||| |||||| |||||||||||| |||||||||  | |||||    
T  27229146 cccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatga 27229047  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
      ||||||||| ||||| ||||||||    
T  27229046 --aaagagttttagaatgcagaatat 27229023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 28781053 - 28780928
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||  ||||| || |||||| | ||||||||||||||| | ||||||||||||||| | |||||||||  | |||||    
T  28781053 cccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatga 28780954  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  28780953 aaaaagagtttgagaattcagaatat 28780928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 27718652 - 27718777
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatata-gatg 121  Q
    ||||| ||||| ||||||||||||||  ||||||||| ||| | | ||||||| ||||||| |||||| |||||||||||| ||||||||| ||| ||||    
T  27718652 cccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaa-ataggatg 27718750  T
Q  122 aagaaagagtttgagaatacagaatat 148  Q
    || ||||||||||||||| ||||||||    
T  27718751 aaaaaagagtttgagaatgcagaatat 27718777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 26622887 - 26622812
Alignment:
Q  26 ctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatga 101  Q
    |||||||| |||||||||||||||||||||  |||||||||| ||||||||||||| | |||||||||||||||||    
T  26622887 ctgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatga 26622812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 26728865 - 26728790
Alignment:
Q  26 ctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatga 101  Q
    |||||||| |||||||||||||||||||||  |||||||||| ||||||||||||| | |||||||||||||||||    
T  26728865 ctgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatga 26728790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 27698767 - 27698891
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatata-gatg 121  Q
    ||||| ||||| | ||||||||||||  ||||||||||||||| | ||| ||| ||||||| |||||| |||||||||||| ||||||||| ||| ||||    
T  27698767 cccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaa-ataggatg 27698865  T
Q  122 aagaaagagtttgagaatacagaatat 148  Q
    || ||||||||||||||| ||||||||    
T  27698866 aa-aaagagtttgagaatgcagaatat 27698891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 26861534 - 26861454
Alignment:
Q  19 acttcccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccat 99  Q
    |||||| |||||||| ||||| || |||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||    
T  26861534 acttcctctgaaactgaggaatacctggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 26861454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 27593289 - 27593373
Alignment:
Q  19 acttcccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgaga 103  Q
    |||||| |||||||| ||||| |||||||||||| |  ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  27593289 acttcctctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtggaagaggaaggtgattgcatagccatgaga 27593373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 27604978 - 27605109
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatga------ttgcatagccatgagatttgagagaatat 116  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||| | ||||||| ||||| || ||      |||||||||||||||| |||||||||  |    
T  27604978 cccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaatt 27605077  T
Q  117 agatgaagaaagagtttgagaatacagaatat 148  Q
     |||||| ||||||||||||||| ||||||||    
T  27605078 ggatgaaaaaagagtttgagaatgcagaatat 27605109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 27677883 - 27677967
Alignment:
Q  19 acttcccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgaga 103  Q
    |||||| |||||| | ||||| |||||||||||| |  ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  27677883 acttcctctgaaattgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgaga 27677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 26823709 - 26823635
Alignment:
Q  74 gaagaggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    |||||||||| ||| ||||||||||||||| |||||||||  | || ||||||||||||||||||| ||||||||    
T  26823709 gaagaggaagttgactgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatat 26823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 26802161 - 26802112
Alignment:
Q  177 acttcctggccacttgctatagccgtgtggaccaatcacacagtaaatat 226  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  26802161 acttcctggccacttcctatagccgtgtggaccaatcatacaataaatat 26802112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 26802356 - 26802227
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatg- 121  Q
    ||||| ||||| ||||||||||||||  |||||||||| |||| | ||||||| |||||||  || ||||||||||||| | ||| |||||  | ||||     
T  26802356 cccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatga 26802257  T
Q  122 ---aagaaagagtttgagaatacagaatat 148  Q
       || ||||||||||||||| ||||||||    
T  26802256 aaaaaaaaagagtttgagaatgcagaatat 26802227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 27531661 - 27531721
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacacagtaaatatcattatact 235  Q
    |||||||||||| |||| |||||||||||||||||||||| ||| |||||| |||| ||||    
T  27531661 aaacttcctggcaacttcctatagccgtgtggaccaatcatacattaaataacattgtact 27531721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 27725321 - 27725377
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgt-ggaccaatcacacagtaaatatcatt 230  Q
    ||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||    
T  27725321 aaacttcctggccacttcctatagccgtgtgggaccaatcatacaataaatatcatt 27725377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 28786019 - 28785980
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatca 214  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  28786019 aaacttcctggccacttcctatagccgtgtggaccaatca 28785980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 26055818 - 26055748
Alignment:
Q  78 aggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    |||||| ||||||||||||||||||| |||| ||||||| |||||| ||||| ||||| |||  |||||||    
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26055748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26884081 - 26884023
Alignment:
Q  19 acttcccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaag 77  Q
    |||||| |||||||| ||||||||||||||  ||||||||||||||| | |||||||||    
T  26884081 acttcctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggaag 26884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 26048736 - 26048667
Alignment:
Q  79 ggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||||||||||||| |||| ||||||| |||||| ||||| ||||| |||  |||||||    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26048667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 26069905 - 26069836
Alignment:
Q  79 ggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||||||||||||| |||| ||||||| |||||| ||||| ||||| |||  |||||||    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 26075787 - 26075718
Alignment:
Q  79 ggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||||||||||||| |||| ||||||| |||||| ||||| ||||| |||  |||||||    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26075718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 26142756 - 26142687
Alignment:
Q  79 ggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||||||||||||| |||| ||||||| |||||| ||||| ||||| |||  |||||||    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26142687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 27338546 - 27338586
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcac 215  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  27338546 aaacttcttggccacttcctatagccgtgtggaccaatcac 27338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 27399286 - 27399326
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcac 215  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  27399286 aaacttcttggccacttcctatagccgtgtggaccaatcac 27399326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 27586227 - 27586278
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacacagtaaatat 226  Q
    |||||||||||||||||   |||||||||||||||||||||| | |||||||    
T  27586227 aaacttcctggccactttgaatagccgtgtggaccaatcacatactaaatat 27586278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 27427904 - 27427999
Alignment:
Q  51 tgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||| | |||||||| || ||| | ||||||| ||||||||| |||||||||   ||||||   |||||||||||||| ||||||||    
T  27427904 tgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgag--aagagtttgagaatgcagaatat 27427999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 25538431 - 25538362
Alignment:
Q  79 ggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||||||||||||| |||| ||||| | |||||| ||||| ||||| |||  |||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatat 25538362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 26655680 - 26655627
Alignment:
Q  183 tggccacttgctatagccgtgtgga-ccaatcacacagtaaatatcattatact 235  Q
    |||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||    
T  26655680 tggccacttgttatagccgtgtggacccaatcacatactaaatatcattgtact 26655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 26761651 - 26761598
Alignment:
Q  183 tggccacttgctatagccgtgtgga-ccaatcacacagtaaatatcattatact 235  Q
    |||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||    
T  26761651 tggccacttgttatagccgtgtggacccaatcacatactaaatatcattgtact 26761598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 26055672 - 26055620
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacacagtaaatatc 227  Q
    ||||||||| || || | |||||||||||||||||||||||| |||| |||||    
T  26055672 aaacttccttgcaacatcctatagccgtgtggaccaatcacagagtagatatc 26055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 26075642 - 26075590
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacacagtaaatatc 227  Q
    ||||||||| || || | |||||||||||||||||||||||| |||| |||||    
T  26075642 aaacttccttgcaacatcctatagccgtgtggaccaatcacagagtagatatc 26075590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 18699660 - 18699785
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    |||||||| || ||||||||||||||  |||||| |||||||| | ||||||| ||||||| ||||||||||||||||||| |||||||||  |||||||    
T  18699660 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatga 18699759  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  18699760 aaaaagagtttgagaatgcagaatat 18699785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 18655737 - 18655862
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    |||||||| || ||||||||||||||  |||||| |||||||| | ||||||| ||||||| ||||||| ||||||||| | |||||||||  | |||||    
T  18655737 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatga 18655836  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  18655837 aaaaagagtttgagaatgcagaatat 18655862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 18731764 - 18731889
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    |||||||| || ||||||||||||||  |||||| |||||||| | ||||||| ||||||| ||||||||||||||||| | | |||||||  | |||||    
T  18731764 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatga 18731863  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  18731864 aaaaagagtttgagaatgcagaatat 18731889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 18679827 - 18679952
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    |||||||| || ||||||||||||||  |||||| |||||||| | ||||| | ||||||| ||||||||||||||||| | | |||||||  | |||||    
T  18679827 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggatga 18679926  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  18679927 aaaaagagtttgagaatgcagaatat 18679952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 18724345 - 18724432
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgaga 110  Q
    |||||||| || ||||||||||||||  |||||| |||||||| | ||||||| ||||||| ||||||||||||||||||| ||||||    
T  18724345 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 18699880 - 18699942
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacacagtaaatatcattatactgc 237  Q
    |||||||||| | |||| |||||||||||||||||||||||||| |||||| |||| ||||||    
T  18699880 aaacttcctgactacttcctatagccgtgtggaccaatcacacattaaataacattctactgc 18699942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 18724537 - 18724580
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacaca 218  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  18724537 aaacttcctgaccacttcctatagccgtgtggaccaatcacaca 18724580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 18655923 - 18655965
Alignment:
Q  188 acttgctatagccgtgtggaccaatcacacagtaaatatcatt 230  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  18655923 actttctatagccgtgtggaccaatcacacagtaaataacatt 18655965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 18680041 - 18680084
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatcacaca 218  Q
    |||||||||| | |||| ||||||||||||||||||||||||||    
T  18680041 aaacttcctgactacttcctatagccgtgtggaccaatcacaca 18680084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 17989338 - 17989433
Alignment:
Q  51 tgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||| | |||||||| || ||| | ||||||| ||||||||| |||||||||   ||||||   |||||||||||||| ||||||||    
T  17989338 tgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgag--aagagtttgagaatgcagaatat 17989433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 18073651 - 18073556
Alignment:
Q  51 tgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||| | |||||||| || ||| | ||||||| ||||||||| |||||||||   ||||||   |||||||||||||| ||||||||    
T  18073651 tgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgag--aagagtttgagaatgcagaatat 18073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 190 - 307
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||| | |||||||||||| || ||||||||||||||||||| |||||||||  |||||||    
T  190 cccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatga 289  T
Q  123 agaaagagtttgagaata 140  Q
    | ||||||||||||||||    
T  290 aaaaagagtttgagaata 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 398 - 437
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatca 214  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  398 aaacttcttggccacttcctatagccgtgtggaccaatca 437  T

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Target: scaffold0419 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 7439 - 7322
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||| | |||||||||||| || ||||||||||||||||||| |||||||||  |||||||    
T  7439 cccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatga 7340  T
Q  123 agaaagagtttgagaata 140  Q
    | ||||||||||||||||    
T  7339 aaaaagagtttgagaata 7322  T

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Target: scaffold0419; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 7231 - 7192
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgtggaccaatca 214  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  7231 aaacttcttggccacttcctatagccgtgtggaccaatca 7192  T

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Target: scaffold0349 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 3695 - 3820
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatata-gatg 121  Q
    ||||| ||||||||||||||||||||  ||||||||||||||| | ||||||| ||||||| |||||| |||||||||| | ||||||||| ||| ||||    
T  3695 cccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaa-ataggatg 3793  T
Q  122 aagaaagagtttgagaatacagaatat 148  Q
    || ||||||||||||||| ||||||||    
T  3794 aaaaaagagtttgagaatgcagaatat 3820  T

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Target: scaffold0349; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 8074 - 8199
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatata-gatg 121  Q
    ||||| ||||| ||||||||||||||  ||||||||| ||| | | ||||||| ||||||| |||||| |||||||||||| ||||||||| ||| ||||    
T  8074 cccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaa-ataggatg 8172  T
Q  122 aagaaagagtttgagaatacagaatat 148  Q
    || ||||||||||||||| ||||||||    
T  8173 aaaaaagagtttgagaatgcagaatat 8199  T

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Target: scaffold0349; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 14628 - 14752
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatata-gatg 121  Q
    ||||| ||||| | ||||||||||||  ||||||||||||||| | ||| ||| ||||||| |||||| |||||||||||| ||||||||| ||| ||||    
T  14628 cccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaa-ataggatg 14726  T
Q  122 aagaaagagtttgagaatacagaatat 148  Q
    || ||||||||||||||| ||||||||    
T  14727 aa-aaagagtttgagaatgcagaatat 14752  T

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Target: scaffold0349; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 3898 - 3954
Alignment:
Q  175 aaacttcctggccacttgctatagccgtgt-ggaccaatcacacagtaaatatcatt 230  Q
    ||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||    
T  3898 aaacttcctggccacttcctatagccgtgtgggaccaatcatacaataaatatcatt 3954  T

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Target: scaffold0277 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 4944 - 5069
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||| | ||||||| ||||||| |||||| |||||||| ||| |||||||||  | |||||    
T  4944 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatga 5043  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  5044 aaaaagagtttgagaattcagaatat 5069  T

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Target: scaffold0277; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 13905 - 14030
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||  ||||| || |||||| | ||||||||||||||| | ||||||||||||||| | |||||||||  | |||||    
T  13905 cccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatga 14004  T
Q  123 agaaagagtttgagaatacagaatat 148  Q
    | ||||||||||||||| ||||||||    
T  14005 aaaaagagtttgagaattcagaatat 14030  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 28164622 - 28164733
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatga 122  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||   ||| | |||||||||||| |||| ||||  | |||||    
T  28164622 cccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattgacagaaattggatga 28164721  T
Q  123 agaaagagtttg 134  Q
      ||||||||||    
T  28164722 gaaaagagtttg 28164733  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 28127940 - 28128019
Alignment:
Q  23 cccctgaaactaaggaacacttggtatttgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttga 108  Q
    |||||||| || ||||||||||||||| |||||||||||||||||      |||||||||  ||||||||||||||||||| ||||    
T  28127940 cccctgaagctgaggaacacttggtatgtgaatccataggaaatt------gaagaggaatgtgattgcatagccatgagaattga 28128019  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 268647 - 268697
Alignment:
Q  53 aatccataggaaattaaagaggaagaggaagatgattgcatagccatgaga 103  Q
    |||||||| || ||| ||||||||||||||| |||||||||||||||||||    
T  268647 aatccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga 268697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 28128177 - 28128230
Alignment:
Q  238 aatttctttaatgtgactactattaaacttttggacaaaacttaaataaataaa 291  Q
    |||||||||||| ||| | || || ||||||||||||||||||| |||||||||    
T  28128177 aatttctttaatttgattgctgttcaacttttggacaaaacttacataaataaa 28128230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 29274071 - 29274125
Alignment:
Q  51 tgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatt 105  Q
    |||||||||| || ||| ||||||||||||||| |||||||||||||||||||||    
T  29274071 tgaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgagatt 29274125  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 59459 - 59364
Alignment:
Q  51 tgaatccataggaaattaaagaggaagaggaagatgattgcatagccatgagatttgagagaatatagatgaagaaagagtttgagaatacagaatat 148  Q
    ||||| ||||||||| | |||||||| || ||| | ||||||| ||||||||| |||||||||   ||||||   |||||||||||||| ||||||||    
T  59459 tgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgag--aagagtttgagaatgcagaatat 59364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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