View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10259_high_1 (Length: 453)

Name: NF10259_high_1
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10259_high_1
NF10259_high_1
[»] chr7 (24 HSPs)
chr7 (1-318)||(45398815-45399131)
chr7 (5-318)||(9357321-9357623)
chr7 (402-435)||(7011809-7011842)
chr7 (402-435)||(7027167-7027200)
chr7 (402-435)||(9357706-9357739)
chr7 (402-435)||(13597318-13597351)
chr7 (402-435)||(19217802-19217835)
chr7 (402-435)||(44748473-44748506)
chr7 (404-435)||(29186839-29186870)
chr7 (402-435)||(18788470-18788503)
chr7 (402-435)||(27072564-27072597)
chr7 (402-435)||(27205716-27205749)
chr7 (402-435)||(29187940-29187973)
chr7 (406-435)||(32518587-32518616)
chr7 (402-435)||(37237138-37237171)
chr7 (402-435)||(43961108-43961141)
chr7 (402-435)||(44231771-44231804)
chr7 (402-435)||(44417632-44417665)
chr7 (402-435)||(44420433-44420466)
chr7 (402-435)||(45398698-45398731)
chr7 (402-435)||(45399920-45399953)
chr7 (402-435)||(48792618-48792651)
chr7 (402-435)||(48793426-48793459)
chr7 (404-432)||(13749180-13749208)
[»] scaffold0878 (2 HSPs)
scaffold0878 (402-435)||(2936-2969)
scaffold0878 (402-431)||(1947-1976)
[»] chr8 (10 HSPs)
chr8 (402-435)||(9245341-9245374)
chr8 (402-435)||(30640972-30641005)
chr8 (404-435)||(9244240-9244271)
chr8 (402-435)||(522007-522040)
chr8 (402-435)||(20309098-20309131)
chr8 (402-435)||(21095731-21095764)
chr8 (402-435)||(22012312-22012345)
chr8 (402-435)||(22013169-22013202)
chr8 (402-435)||(26366104-26366137)
chr8 (402-435)||(41637006-41637039)
[»] chr6 (9 HSPs)
chr6 (402-435)||(21094580-21094613)
chr6 (402-435)||(21095289-21095322)
chr6 (402-435)||(34996671-34996704)
chr6 (404-435)||(27719910-27719941)
chr6 (402-435)||(3000703-3000736)
chr6 (402-435)||(32347983-32348016)
chr6 (402-435)||(32348947-32348980)
chr6 (402-431)||(32713793-32713822)
chr6 (402-435)||(34995526-34995559)
[»] chr5 (6 HSPs)
chr5 (402-435)||(12372489-12372522)
chr5 (402-435)||(13278141-13278174)
chr5 (402-435)||(39164229-39164262)
chr5 (402-435)||(6803535-6803568)
chr5 (402-435)||(19229013-19229046)
chr5 (407-435)||(4031996-4032024)
[»] chr4 (13 HSPs)
chr4 (402-435)||(7261453-7261486)
chr4 (402-435)||(18091755-18091788)
chr4 (402-435)||(35927026-35927059)
chr4 (404-435)||(36074706-36074737)
chr4 (402-435)||(8815267-8815300)
chr4 (402-435)||(23757880-23757913)
chr4 (402-435)||(34095569-34095602)
chr4 (402-435)||(38031343-38031376)
chr4 (402-435)||(38032330-38032363)
chr4 (402-435)||(48081290-48081323)
chr4 (402-435)||(48081477-48081510)
chr4 (402-435)||(56233883-56233916)
chr4 (402-435)||(56234931-56234964)
[»] chr3 (21 HSPs)
chr3 (402-435)||(17741005-17741038)
chr3 (402-435)||(19042325-19042358)
chr3 (402-435)||(37610673-37610706)
chr3 (402-435)||(46903534-46903567)
chr3 (402-435)||(52522101-52522134)
chr3 (402-434)||(11346988-11347020)
chr3 (402-435)||(5689894-5689927)
chr3 (406-435)||(17116376-17116405)
chr3 (402-435)||(21729098-21729131)
chr3 (402-435)||(28777597-28777630)
chr3 (402-435)||(31937210-31937243)
chr3 (402-431)||(35758183-35758212)
chr3 (402-431)||(35759141-35759170)
chr3 (402-431)||(43393963-43393992)
chr3 (402-435)||(47429797-47429830)
chr3 (402-435)||(47431097-47431130)
chr3 (402-435)||(53101697-53101730)
chr3 (402-435)||(55209956-55209989)
chr3 (403-435)||(21728085-21728117)
chr3 (402-430)||(23073284-23073312)
chr3 (406-434)||(53180718-53180746)
[»] chr2 (3 HSPs)
chr2 (402-435)||(27892246-27892279)
chr2 (402-431)||(16602904-16602933)
chr2 (402-431)||(27891285-27891314)
[»] chr1 (10 HSPs)
chr1 (402-435)||(47533764-47533797)
chr1 (402-435)||(51693322-51693355)
chr1 (402-435)||(52759538-52759571)
chr1 (402-435)||(52761506-52761539)
chr1 (405-435)||(5488780-5488810)
chr1 (402-435)||(7111385-7111418)
chr1 (402-435)||(21203186-21203219)
chr1 (402-431)||(38235060-38235089)
chr1 (402-435)||(51468514-51468547)
chr1 (402-431)||(51468811-51468840)
[»] scaffold0349 (1 HSPs)
scaffold0349 (404-435)||(9332-9363)
[»] scaffold0026 (1 HSPs)
scaffold0026 (402-435)||(104426-104459)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 45399131 - 45398815
Alignment:
Q  1 ggactctcggtttggacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttaccattgttaatggtat 100  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45399131 ggactctcagtttcgacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttaccattgttaatggtat 45399032  T
Q  101 cctcaaattatgcaatagctttcacacgttagtttagaaatagtgggtaatagtgtaactcaaaatctagctcagttagctcatatagatcgaaataaga 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45399031 cctcaaattatgcaatagctttcacacgtgagtttagaaatagtgggtaatagtgtgactcaaaatctagctcagttagctcatatagatcgaaataaga 45398932  T
Q  201 tttggatcgaagaggttccaacccaaattcattttgtgtatttcaaaaatatattgaattattgaaatnnnnnnnnnntgatgatgagattgttgtgtaa 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| || |||||||||    
T  45398931 tttggatcgaagagattccaacccaaattcattttgtgtatttcaaaaatatattgaattattgaaat-aaaaaaaaatgatgatgatatagttgtgtaa 45398833  T
Q  301 agatttaatttttgaaag 318  Q
    ||||||||||||||||||    
T  45398832 agatttaatttttgaaag 45398815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 9357321 - 9357623
Alignment:
Q  5 tctcggtttggacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttaccattgttaatggtatcctc 104  Q
    |||||||||  ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9357321 tctcggtttccacaagtgattgtgagttgtgatagagttattaagtttttgaataggaaaggggaaaaagagagatcttaccattgttaatggtatcctc 9357420  T
Q  105 aaattatgcaatagctttcacacgttagtttagaaatag--tgggtaatagtgtaactcaaaatctagctcagttagctcatatagatcgaaataagatt 202  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||| | ||||| ||||||||  |||||||||||||||||| ||||||||||    
T  9357421 aaattatgcaatagctttcacacgtgagtttagaaatagattgggtaatagtatgactcataatctagcctagttagctcatatagatccaaataagatt 9357520  T
Q  203 tggatcgaagaggttccaacccaaattcattttgtgtatttcaaaaatatattgaattattgaaatnnnnnnnnnntgatgatgagattgttgtgtaaag 302  Q
    |          ||||||||   ||||||||||||||||||||||| ||||||||||||||||||||          |||||||||||   ||||||||||    
T  9357521 t----------ggttccaagttaaattcattttgtgtatttcaaagatatattgaattattgaaataaaaaaaaaatgatgatgaga---ttgtgtaaag 9357607  T
Q  303 atttaatttttgaaag 318  Q
    ||||||||||||||||    
T  9357608 atttaatttttgaaag 9357623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 7011842 - 7011809
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  7011842 agtaaataaattaggtgttggtgatacactataa 7011809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 7027200 - 7027167
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  7027200 agtaaataaattaggtgttggtgatacactataa 7027167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 9357706 - 9357739
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  9357706 agtaaataaattaggtgttggtgatacactataa 9357739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 13597351 - 13597318
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  13597351 agtaaataaattaggtgttggtgatacactataa 13597318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 19217835 - 19217802
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  19217835 agtaaataaattaggtgttggtgatacactataa 19217802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 44748473 - 44748506
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  44748473 agtaaataaattaggtgttggtgatacactataa 44748506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 29186870 - 29186839
Alignment:
Q  404 taaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||    
T  29186870 taaataaattaggtgttggtgatacactataa 29186839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 18788470 - 18788503
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||||| |||||    
T  18788470 agtaaataaattaggtgttggtgatacattataa 18788503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 27072564 - 27072597
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||| |||||||    
T  27072564 agtaaataaattaggtgttggtgataaactataa 27072597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 27205749 - 27205716
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||| |||||||    
T  27205749 agtaaataaattaggtgttggtgatagactataa 27205716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 29187940 - 29187973
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||| ||||||||    
T  29187940 agtaaataaattaggtgttggtgatgcactataa 29187973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 435
Target Start/End: Complemental strand, 32518616 - 32518587
Alignment:
Q  406 aataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||    
T  32518616 aataaattaggtgttggtgatacactataa 32518587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 37237138 - 37237171
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||| |||||||||||    
T  37237138 agtaaataaattaggtgttggtcatacactataa 37237171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 43961141 - 43961108
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||| ||||||||||||||    
T  43961141 agtaaataaattaggtgttagtgatacactataa 43961108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 44231771 - 44231804
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||| ||||||||||||||||||||||    
T  44231771 agtaaataaatcaggtgttggtgatacactataa 44231804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 44417665 - 44417632
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||| |||||||    
T  44417665 agtaaataaattaggtgttggtgatagactataa 44417632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 44420433 - 44420466
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||| |||||||||||||||||||    
T  44420433 agtaaataaattagatgttggtgatacactataa 44420466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 45398731 - 45398698
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||| |||||||||||||||||||    
T  45398731 agtaaataaattagatgttggtgatacactataa 45398698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 45399920 - 45399953
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||| ||||||||||||||    
T  45399920 agtaaataaattaggtgttagtgatacactataa 45399953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 48792651 - 48792618
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||| |||||||||||||||||||||    
T  48792651 agtaaataaatttggtgttggtgatacactataa 48792618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 48793426 - 48793459
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||| |||||||||||||||||||||    
T  48793426 agtaaataaatttggtgttggtgatacactataa 48793459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 432
Target Start/End: Complemental strand, 13749208 - 13749180
Alignment:
Q  404 taaataaattaggtgttggtgatacacta 432  Q
    |||||||||||||||||||||||||||||    
T  13749208 taaataaattaggtgttggtgatacacta 13749180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 2936 - 2969
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  2936 agtaaataaattaggtgttggtgatacactataa 2969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Complemental strand, 1976 - 1947
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  1976 agtaaataaattaggtgttggtgatacact 1947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 9245341 - 9245374
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  9245341 agtaaataaattaggtgttggtgatacactataa 9245374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 30641005 - 30640972
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  30641005 agtaaataaattaggtgttggtgatacactataa 30640972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 9244271 - 9244240
Alignment:
Q  404 taaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||    
T  9244271 taaataaattaggtgttggtgatacactataa 9244240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 522007 - 522040
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||| ||||||||||||||||||    
T  522007 agtaaataaattaggggttggtgatacactataa 522040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 20309131 - 20309098
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||| |||||||||||||||||    
T  20309131 agtaaataaattaggtattggtgatacactataa 20309098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 21095764 - 21095731
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||| |||||||||||||||||    
T  21095764 agtaaataaattaggtattggtgatacactataa 21095731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 22012345 - 22012312
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||| ||||||||||||||||||||||    
T  22012345 agtaaataaatcaggtgttggtgatacactataa 22012312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 22013169 - 22013202
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||| ||||||||||||||||||||||    
T  22013169 agtaaataaatcaggtgttggtgatacactataa 22013202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 26366104 - 26366137
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  26366104 agtaaataaattatgtgttggtgatacactataa 26366137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 41637039 - 41637006
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||| ||||    
T  41637039 agtaaataaattaggtgttggtgatacacgataa 41637006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 21094613 - 21094580
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  21094613 agtaaataaattaggtgttggtgatacactataa 21094580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 21095289 - 21095322
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  21095289 agtaaataaattaggtgttggtgatacactataa 21095322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 34996671 - 34996704
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  34996671 agtaaataaattaggtgttggtgatacactataa 34996704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 27719941 - 27719910
Alignment:
Q  404 taaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||    
T  27719941 taaataaattaggtgttggtgatacactataa 27719910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 3000703 - 3000736
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||| ||||||||||||||    
T  3000703 agtaaataaattaggtgttagtgatacactataa 3000736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 32348016 - 32347983
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  32348016 agtaaataaattaggtgttgatgatacactataa 32347983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 32348947 - 32348980
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  32348947 agtaaataaattaggtgttgatgatacactataa 32348980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 32713793 - 32713822
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  32713793 agtaaataaattaggtgttggtgatacact 32713822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 34995559 - 34995526
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||| |||||||||||||||||||    
T  34995559 agtaaataaattagatgttggtgatacactataa 34995526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 12372522 - 12372489
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  12372522 agtaaataaattaggtgttggtgatacactataa 12372489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 13278141 - 13278174
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  13278141 agtaaataaattaggtgttggtgatacactataa 13278174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 39164262 - 39164229
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  39164262 agtaaataaattaggtgttggtgatacactataa 39164229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 6803535 - 6803568
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||| |||||||||||||||||||    
T  6803535 agtaaataaattagatgttggtgatacactataa 6803568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 19229046 - 19229013
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  19229046 agtaaataaattaggtgttgatgatacactataa 19229013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 4032024 - 4031996
Alignment:
Q  407 ataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||||||    
T  4032024 ataaattaggtgttggtgatacactataa 4031996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 7261453 - 7261486
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  7261453 agtaaataaattaggtgttggtgatacactataa 7261486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 18091788 - 18091755
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  18091788 agtaaataaattaggtgttggtgatacactataa 18091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 35927026 - 35927059
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  35927026 agtaaataaattaggtgttggtgatacactataa 35927059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 36074706 - 36074737
Alignment:
Q  404 taaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||    
T  36074706 taaataaattaggtgttggtgatacactataa 36074737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 8815267 - 8815300
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||| |||||||||||||||||||||    
T  8815267 agtaaataaatttggtgttggtgatacactataa 8815300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 23757880 - 23757913
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||| ||||    
T  23757880 agtaaataaattaggtgttggtgatacaccataa 23757913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 34095569 - 34095602
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||| |||||||||||||||    
T  34095569 agtaaataaattaggtgtgggtgatacactataa 34095602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 38031376 - 38031343
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  38031376 agtaaataaattaggtgttgatgatacactataa 38031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 38032330 - 38032363
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  38032330 agtaaataaattaggtgttgatgatacactataa 38032363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 48081290 - 48081323
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||||| |||||    
T  48081290 agtaaataaattaggtgttggtgatacagtataa 48081323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 48081477 - 48081510
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||||| |||||    
T  48081477 agtaaataaattaggtgttggtgatacattataa 48081510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 56233916 - 56233883
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||| ||||||||||||    
T  56233916 agtaaataaattaggtgttggcgatacactataa 56233883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 56234931 - 56234964
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||||| |||||    
T  56234931 agtaaataaattaggtgttggtgatacattataa 56234964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 17741038 - 17741005
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  17741038 agtaaataaattaggtgttggtgatacactataa 17741005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 19042358 - 19042325
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  19042358 agtaaataaattaggtgttggtgatacactataa 19042325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 37610673 - 37610706
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  37610673 agtaaataaattaggtgttggtgatacactataa 37610706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 46903534 - 46903567
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  46903534 agtaaataaattaggtgttggtgatacactataa 46903567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 52522134 - 52522101
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  52522134 agtaaataaattaggtgttggtgatacactataa 52522101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 11347020 - 11346988
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactata 434  Q
    |||||||||||||||||||||||||||||||||    
T  11347020 agtaaataaattaggtgttggtgatacactata 11346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 5689927 - 5689894
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  5689927 agtaaataaattaagtgttggtgatacactataa 5689894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 435
Target Start/End: Complemental strand, 17116405 - 17116376
Alignment:
Q  406 aataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||    
T  17116405 aataaattaggtgttggtgatacactataa 17116376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 21729098 - 21729131
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  21729098 agtaaataaattaggtgttgatgatacactataa 21729131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 28777597 - 28777630
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  28777597 agtaaataaattaggtgttgatgatacactataa 28777630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 31937243 - 31937210
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||| |||||||||||||||||||||||||||    
T  31937243 agtaaaaaaattaggtgttggtgatacactataa 31937210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Complemental strand, 35758212 - 35758183
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  35758212 agtaaataaattaggtgttggtgatacact 35758183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 35759141 - 35759170
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  35759141 agtaaataaattaggtgttggtgatacact 35759170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 43393963 - 43393992
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  43393963 agtaaataaattaggtgttggtgatacact 43393992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 47429830 - 47429797
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||| |||||||||||||||||||    
T  47429830 agtaaataaattagatgttggtgatacactataa 47429797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 47431097 - 47431130
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||| |||||||||||||||    
T  47431097 agtaaataaattaggtgtgggtgatacactataa 47431130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 53101730 - 53101697
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  53101730 agtaaataaattaagtgttggtgatacactataa 53101697  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 55209989 - 55209956
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||| |||||||||||    
T  55209989 agtaaataaattaggtgttggtaatacactataa 55209956  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 21728117 - 21728085
Alignment:
Q  403 gtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||| |||||    
T  21728117 gtaaataaattaggtgttggtgatacattataa 21728085  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 23073284 - 23073312
Alignment:
Q  402 agtaaataaattaggtgttggtgatacac 430  Q
    |||||||||||||||||||||||||||||    
T  23073284 agtaaataaattaggtgttggtgatacac 23073312  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 434
Target Start/End: Original strand, 53180718 - 53180746
Alignment:
Q  406 aataaattaggtgttggtgatacactata 434  Q
    |||||||||||||||||||||||||||||    
T  53180718 aataaattaggtgttggtgatacactata 53180746  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 27892246 - 27892279
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  27892246 agtaaataaattaggtgttggtgatacactataa 27892279  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Complemental strand, 16602933 - 16602904
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  16602933 agtaaataaattaggtgttggtgatacact 16602904  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Complemental strand, 27891314 - 27891285
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  27891314 agtaaataaattaggtgttggtgatacact 27891285  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 47533764 - 47533797
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  47533764 agtaaataaattaggtgttggtgatacactataa 47533797  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 51693355 - 51693322
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  51693355 agtaaataaattaggtgttggtgatacactataa 51693322  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 52759571 - 52759538
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  52759571 agtaaataaattaggtgttggtgatacactataa 52759538  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 52761506 - 52761539
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||||    
T  52761506 agtaaataaattaggtgttggtgatacactataa 52761539  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Original strand, 5488780 - 5488810
Alignment:
Q  405 aaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||||||||||||||    
T  5488780 aaataaattaggtgttggtgatacactataa 5488810  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 7111385 - 7111418
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  7111385 agtaaataaattaggtgttgatgatacactataa 7111418  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 21203219 - 21203186
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||||||||| |||||||||||||    
T  21203219 agtaaataaattaggtgttgatgatacactataa 21203186  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 38235060 - 38235089
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  38235060 agtaaataaattaggtgttggtgatacact 38235089  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 51468547 - 51468514
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||| |||||||||||||||||||||    
T  51468547 agtaaataaattgggtgttggtgatacactataa 51468514  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 51468811 - 51468840
Alignment:
Q  402 agtaaataaattaggtgttggtgatacact 431  Q
    ||||||||||||||||||||||||||||||    
T  51468811 agtaaataaattaggtgttggtgatacact 51468840  T

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Target: scaffold0349 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 9363 - 9332
Alignment:
Q  404 taaataaattaggtgttggtgatacactataa 435  Q
    ||||||||||||||||||||||||||||||||    
T  9363 taaataaattaggtgttggtgatacactataa 9332  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 104459 - 104426
Alignment:
Q  402 agtaaataaattaggtgttggtgatacactataa 435  Q
    |||||||||||||| |||||||||||||||||||    
T  104459 agtaaataaattagatgttggtgatacactataa 104426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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