View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10259_high_10 (Length: 255)
Name: NF10259_high_10
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10259_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 24728403 - 24728185
Alignment:
| Q |
19 |
caatctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24728403 |
caatctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcggcattcttcatttccctatacttagcagcccagtcacgt |
24728304 |
T |
|
| Q |
119 |
tgattttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcacttctttcttccatg |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24728303 |
tggttttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcagttggtgtcaaatgatagtgagacatcacttctttcttccatg |
24728204 |
T |
|
| Q |
219 |
tttcattctttgatgccca |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24728203 |
tttcattctttgatgccca |
24728185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 24688892 - 24688681
Alignment:
| Q |
23 |
ctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgat |
122 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| |||||||||||| ||| | | |||||| |||| ||||||| | |||||||||| |||| | |
|
|
| T |
24688892 |
ctcacatccccaagtggcacttctttcagaaatcccactggtggcttaaacacacccaaattcttgattttcctatacattaaagcccaatcatgttggt |
24688793 |
T |
|
| Q |
123 |
tttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcacttctttcttccatgtttc |
222 |
Q |
| |
|
||||||| ||||| | |||||||||||||||| ||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||| || |
|
|
| T |
24688792 |
tttcttctgataagatcttccttggaagcaaagttgcccaagcagattcatcagttggtgtcacatgataatgagacatcacttctttcttccatgtctc |
24688693 |
T |
|
| Q |
223 |
attctttgatgc |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24688692 |
attctttgatgc |
24688681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 24719210 - 24718986
Alignment:
| Q |
23 |
ctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgat |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24719210 |
ctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcggcattcttcatttccctatacttagcagcccaatcacgttggt |
24719111 |
T |
|
| Q |
123 |
tttcttccg---ataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgaga---------catcacttcttt |
210 |
Q |
| |
|
|||||| | | || | || | |||||| || ||| ||||||||||||||||| |||||||| |||| ||||| |||||||||||| |
|
|
| T |
24719110 |
tttcttgtgttaagaacatctcctttggaatcatttcttgccaagccgattcatcggatggtgtcacatgaacatgagactgatacatcatcacttcttt |
24719011 |
T |
|
| Q |
211 |
cttccatgtttcattctttgatgcc |
235 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
24719010 |
cttccatgtctcattctttgatgcc |
24718986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University