View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10259_high_7 (Length: 303)
Name: NF10259_high_7
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10259_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 29688340 - 29688051
Alignment:
| Q |
1 |
attgatctatcataatgacaagccaaccagtgaataaccccatttaggagtgaatctactctagaatacatacactgctgtgaataacgcaaattgtcac |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29688340 |
attgatctatcataatgaaaagccaaccagtgaataaccccatttaggagtgaatctactctagaatacatacactgctgtgaataacgcaaattgtcac |
29688241 |
T |
|
| Q |
101 |
caccctccatttccttccacgtattagctcttaatgagaaaagccccaagtgagataacaaaccacgtgcacttggatcatagcacattgaaagaaccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29688240 |
caccctccatttccttccacgtattagctcttaatgagaaaagccccaagtgagataacaaaccacgtgcactcggatcatagcacattgaaagaaccag |
29688141 |
T |
|
| Q |
201 |
gtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaataacagtagtaaagggtatttgtct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29688140 |
gtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaataacagtagtaaagggtatttgtct |
29688051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 29696261 - 29696173
Alignment:
| Q |
178 |
tcatagcacattgaaagaaccaggtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaat |
266 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||| || ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
29696261 |
tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaataatttgcatctggattggaatcaat |
29696173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 29712415 - 29712582
Alignment:
| Q |
101 |
caccctccatttccttccacgtattagctcttaatgagaaaagccccaagtgagataacaaaccacgtgcacttggatcatagcacattgaaagaaccag |
200 |
Q |
| |
|
||||||| ||||| ||||||| || |||||| |||||||||||||| ||| ||| |||| | || ||| | |||||||| |||| ||||| || | |
|
|
| T |
29712415 |
caccctcaatttcgttccacgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaa |
29712514 |
T |
|
| Q |
201 |
gtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaataa |
268 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||| |||| | ||| ||||||||| ||||||||| |
|
|
| T |
29712515 |
gtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataa |
29712582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 179066 - 179025
Alignment:
| Q |
201 |
gtaatcatcagtagactcatcatacccaaaaccatagaaata |
242 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
179066 |
gtaatcatctgttgactcctcatacccaaaaccatagaaata |
179025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University