View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10259_low_13 (Length: 263)
Name: NF10259_low_13
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10259_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 34725729 - 34725488
Alignment:
| Q |
18 |
actgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtttgccacatttttgtgctgann |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725729 |
actgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtttgccacatttttgtgctgatt |
34725630 |
T |
|
| Q |
118 |
nnnnnnaactcttgcaggtgtagaagatttcatgaacttttctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaatcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725629 |
ttttttaactcttgcaggtgtagaagatttcatgaacttttctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaatcag |
34725530 |
T |
|
| Q |
218 |
tgggattcatatgccactaaatccatttctcaagaacattct |
259 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34725529 |
tgggattcatatgcgactaaatccatttctcaagaacattct |
34725488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 34729787 - 34729545
Alignment:
| Q |
18 |
actgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtt-tgccacattt-ttgtgctga |
115 |
Q |
| |
|
|||||||||||| ||||| |||| |||| | ||||||||||||||||| | ||||||||||||||| | ||| ||||| | ||| ||| ||||||||| |
|
|
| T |
34729787 |
actgtcactatgttttctgatgattccattgtccattttacatccaaagttcttgcaaccaagagtatcgatcgaggttatttcacgtttattgtgctga |
34729688 |
T |
|
| Q |
116 |
nnnnnnnnaactcttgcaggtgtagaagatttcatgaacttttctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaatc |
215 |
Q |
| |
|
|||| |||||||||||||||||||||| | | ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34729687 |
ttttttataact-ttgcaggtgtagaagatttcattaccgtttctgatacaaatgatgaacaagactttatttgtgctctctctcttctgtcaaccaatc |
34729589 |
T |
|
| Q |
216 |
agtgggattcatatgccactaaatccatttctcaagaacattct |
259 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
34729588 |
catgggattcatatgcgactaaatccatgtctctagaacattct |
34729545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 129 - 259
Target Start/End: Complemental strand, 34720201 - 34720071
Alignment:
| Q |
129 |
ttgcaggtgtagaagatttcatgaacttttctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaatcagtgggattcata |
228 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||| ||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
34720201 |
ttgcaggtgtagaagatttcattagcttctctgatacagatgctacggaagattttacttgtgcttcctctcttctgtcaaccagtccgtgggattcata |
34720102 |
T |
|
| Q |
229 |
tgccactaaatccatttctcaagaacattct |
259 |
Q |
| |
|
||| || |||||| |||||| || ||||||| |
|
|
| T |
34720101 |
tgcaaccaaatccgtttctctagtacattct |
34720071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 38610383 - 38610305
Alignment:
| Q |
18 |
actgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtt |
96 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
38610383 |
actgtcactatgctttctgttgatttcaatgtccattttacatccaaagtccttgcaaccaagagtatcaatccaggtt |
38610305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 38795168 - 38795090
Alignment:
| Q |
18 |
actgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtt |
96 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
38795168 |
actgtcactatgctttctgttgatttcaatgtccattttacatccaaagtccttgcaaccaagagtatcaatccaggtt |
38795090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 38610216 - 38610139
Alignment:
| Q |
182 |
tttacttgtgctctctctcttctgtcaaccaatcagtgggattcatatgccactaaatccatttctcaagaacattct |
259 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||| ||||||||||||||| | ||||||||| |||| |||||||||| |
|
|
| T |
38610216 |
tttacttgtgctctttcacttctgtcaatcaatccgtgggattcatatgcgattaaatccatgtctctagaacattct |
38610139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 38795000 - 38794923
Alignment:
| Q |
182 |
tttacttgtgctctctctcttctgtcaaccaatcagtgggattcatatgccactaaatccatttctcaagaacattct |
259 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||| ||||||||||||||| | ||||||||| |||| |||||||||| |
|
|
| T |
38795000 |
tttacttgtgctctttcacttctgtcaatcaatccgtgggattcatatgcgattaaatccatgtctctagaacattct |
38794923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 34720487 - 34720424
Alignment:
| Q |
20 |
tgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagt |
83 |
Q |
| |
|
|||||||||||| ||| |||| ||| || ||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
34720487 |
tgtcactatgctatctgatgattccgatgtccattttacatctaaagtccttgaaaccaagagt |
34720424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 38496485 - 38496541
Alignment:
| Q |
158 |
tctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaat |
214 |
Q |
| |
|
|||||| ||| |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
38496485 |
tctgatccaagtgctacacaagatgttaaccgtgctctctctcttctgtcaaccaat |
38496541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University