View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10259_low_2 (Length: 445)
Name: NF10259_low_2
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10259_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 6443383 - 6443762
Alignment:
| Q |
22 |
ggcttcaactgaacccactcgtagcgtccttccaacggaacatccttcacaatatcataattataccttcaaaatcatttttcaacaatcataatctgag |
121 |
Q |
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| T |
6443383 |
ggcttcaactgaacccactcgtagcgtccttccaacggaacatccttcacaatatcataattataccttcaaaatcatttttcaacaatcataatctgag |
6443482 |
T |
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| Q |
122 |
ttttgaaaaataaagcagaaatatatatagacaaaatgaatattgaacttacttttcttgaaactttttctgaatgtttttctcagcagcagagaaaaat |
221 |
Q |
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| T |
6443483 |
ttttgaaaaataaagcagaaatatatatagagaaaatgaatattgaacttacttttcttgaaactttttctgaatgtttttctcagcagcagagaaaaat |
6443582 |
T |
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| Q |
222 |
tcttcaagctcaaattccgttggcatattttttggagatgaaatcggacggttagaatttgtttccatcgactcaaactcgtttgaacgagaacgactca |
321 |
Q |
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| T |
6443583 |
tcttcaagctcaaatcccgttggcatattttttggagatgaaatcggacggttagaatttgtttccatcgactcaaactcgtttgaacgagaacgactca |
6443682 |
T |
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| Q |
322 |
tctctctcctacactcacaaaatattctgtttcagaattttgttatgaaatgaaaatgtgaacgcgtaaagttagttata |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6443683 |
tctctctcctacactcacaaaatattctgtttcagaattttgttatgaaatgaaaatgtgaacgcgtaaagttagttata |
6443762 |
T |
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