View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10259_low_21 (Length: 238)

Name: NF10259_low_21
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10259_low_21
NF10259_low_21
[»] chr5 (5 HSPs)
chr5 (16-238)||(29688389-29688611)
chr5 (16-205)||(29712020-29712209)
chr5 (16-134)||(29696600-29696718)
chr5 (110-151)||(179405-179446)
chr5 (93-148)||(9120113-9120168)
[»] chr4 (21 HSPs)
chr4 (16-142)||(48853037-48853163)
chr4 (45-151)||(45365828-45365934)
chr4 (46-151)||(7790427-7790532)
chr4 (16-139)||(49043747-49043870)
chr4 (58-138)||(49038499-49038579)
chr4 (16-151)||(7771742-7771877)
chr4 (69-140)||(45384524-45384595)
chr4 (57-148)||(48899090-48899181)
chr4 (74-151)||(7878730-7878807)
chr4 (61-142)||(48870916-48870997)
chr4 (61-142)||(48876220-48876301)
chr4 (61-142)||(48886602-48886683)
chr4 (16-148)||(7773404-7773536)
chr4 (83-139)||(48147359-48147415)
chr4 (76-142)||(45371713-45371779)
chr4 (76-138)||(48864395-48864457)
chr4 (46-151)||(7908649-7908754)
chr4 (92-137)||(47208238-47208283)
chr4 (76-148)||(7765992-7766064)
chr4 (76-148)||(7786814-7786886)
chr4 (73-137)||(7813838-7813902)
[»] chr6 (1 HSPs)
chr6 (16-139)||(21016180-21016303)
[»] chr3 (3 HSPs)
chr3 (45-149)||(47451508-47451612)
chr3 (83-137)||(11024149-11024203)
chr3 (94-146)||(11015148-11015200)
[»] chr8 (3 HSPs)
chr8 (83-151)||(12195671-12195739)
chr8 (83-151)||(12440099-12440167)
chr8 (76-137)||(15349244-15349305)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 29688611 - 29688389
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29688611 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtat 29688512  T
Q  116 tttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatcctctgaatagccataaatcatacactctaggaccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688511 tttttcatcacccatatttcaactgtaccattatcagtgcacatatcaaatagactgagacatcctctgaatagccataaatcatacactctaggaccat 29688412  T
Q  216 tatttataccaataggcaaaggc 238  Q
    |||||||||||||||||||||||    
T  29688411 tatttataccaataggcaaaggc 29688389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 29712020 - 29712209
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    ||||||||||||||||   |||||||||||||| || ||  |||||||  || ||||||| | ||| |||||||| |||||||| |||   |||||||||    
T  29712020 atcaccactttttgtatcgtatttcggacaaaaataatggctgggaattccatcaaaagacaaaacaagagtcttagtccaagaagatgtcacattgtat 29712119  T
Q  116 tttttcatcacccatatttcaactgtaccattatca-gtgcacatatcaaatagactgagacatcctctgaatagccataaatcatacact 205  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||| |||| ||||||||||||||||    
T  29712120 ttttccatcacccatatttcaactgtaccattatcatgtgc-catatcccatagactgagacatcctctaaatacccataaatcatacact 29712209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 29696718 - 29696600
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    |||||||||||||||| | |||||||| |||||| |||||   ||| || || ||||||| || || |||||||| |||||||| ||||| |||||||||    
T  29696718 atcaccactttttgtatagtatttcggccaaaaggagtgagcaggattgccatcaaaagacaggacaagagtcttagtccaagaggattgcacattgtat 29696619  T
Q  116 tttttcatcacccatattt 134  Q
    |||| ||||||||||||||    
T  29696618 ttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 179446 - 179405
Alignment:
Q  110 ttgtattttttcatcacccatatttcaactgtaccattatca 151  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  179446 ttgtattctttcatcacccatatttcaactgtatcattatca 179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 9120168 - 9120113
Alignment:
Q  93 tccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 148  Q
    ||||||| || || || ||||||| ||||||||||||||||||||||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcatta 9120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 48853163 - 48853037
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    ||||||||| ||||||||| || | ||  ||||||||||| ||||||||  || |||||||||||| |||||||| |||||||||||  | || ||||||    
T  48853163 atcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgcactttgtat 48853064  T
Q  116 tttttcatcacccatatttcaactgta 142  Q
    | |||||| ||||||||||||||||||    
T  48853063 tctttcatgacccatatttcaactgta 48853037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 45365828 - 45365934
Alignment:
Q  45 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacc 144  Q
    ||||||| ||| |||||||| || ||| || ||||||| |||||||||||||||||||  | || || |||| ||||||||||||||||||||||||| |    
T  45365828 aaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T
Q  145 attatca 151  Q
    |||||||    
T  45365928 attatca 45365934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 7790532 - 7790427
Alignment:
Q  46 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 145  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| || ||||||||||| || || ||||||| |||||||||||||||||||| |||| ||    
T  7790532 aaagtagtgatcaggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatca 7790433  T
Q  146 ttatca 151  Q
    ||||||    
T  7790432 ttatca 7790427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 49043747 - 49043870
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    ||||||| ||||||||||| || | |||   ||||| ||| |||||||| || ||| ||||| ||| |||||||| ||||| ||||| || || ||||||    
T  49043747 atcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtat 49043846  T
Q  116 tttttcatcacccatatttcaact 139  Q
    | ||||||||||||||||||||||    
T  49043847 tctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 49038499 - 49038579
Alignment:
Q  58 gggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 138  Q
    ||||||| ||| || ||| ||||| |||||||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  49038499 gggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 7771877 - 7771742
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    ||||||| |||||||| ||||| | ||   ||||||||||   |||||| || ||| ||||||||| ||||| || ||||| ||||| || || ||||||    
T  7771877 atcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtat 7771778  T
Q  116 tttttcatcacccatatttcaactgtaccattatca 151  Q
    | |||||||||||||||| ||| |||| ||||||||    
T  7771777 tctttcatcacccatattacaattgtatcattatca 7771742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 45384524 - 45384595
Alignment:
Q  69 caaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactg 140  Q
    |||||| ||||||  ||||||||||||||||||| || || || |||| |||||||||||||||||||||||    
T  45384524 caaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 48899181 - 48899090
Alignment:
Q  57 tgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 148  Q
    |||||||| || ||| || |||||| ||||||  ||||||||| |||| ||| || |||| ||||||||||||||||||||||||| |||||    
T  48899181 tgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcatta 48899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 7878807 - 7878730
Alignment:
Q  74 gaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 151  Q
    |||||||| ||||| ||  ||||||| || || || ||||||| ||||||||||||||||||||||||| ||||||||    
T  7878807 gaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatca 7878730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 48870997 - 48870916
Alignment:
Q  61 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 142  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48870916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 48876301 - 48876220
Alignment:
Q  61 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 142  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48876220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 48886683 - 48886602
Alignment:
Q  61 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 142  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |  || |||||||  ||||||||||| ||||||| ||||    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 48886602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 7773404 - 7773536
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    ||||||| |||||||| ||||| | ||   ||||||||||   |||||| |  ||| ||||||||| ||||  ||  |||||||||| || || ||||||    
T  7773404 atcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgtat 7773503  T
Q  116 tttttcatcacccatatttcaactgtaccatta 148  Q
    | ||||||||||||||||||||||||| |||||    
T  7773504 tctttcatcacccatatttcaactgtatcatta 7773536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 48147359 - 48147415
Alignment:
Q  83 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaact 139  Q
    |||||||| ||||||||||| || || ||||||| ||||||||||||||||||||||    
T  48147359 agagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 45371713 - 45371779
Alignment:
Q  76 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgta 142  Q
    |||||| | |||||| ||||||||||| || || ||||||| |||||| ||||||||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgta 45371779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  76 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaac 138  Q
    |||||| ||| |||| ||||||||||| || || ||||||| |||||||||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 7908754 - 7908649
Alignment:
Q  46 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacca 145  Q
    ||||||||||   |||||| || ||| ||||||||| ||||| ||  ||||||| || || || ||||||| |||||||||||||||||||| |||| |     
T  7908754 aaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtatct 7908655  T
Q  146 ttatca 151  Q
    ||||||    
T  7908654 ttatca 7908649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 47208283 - 47208238
Alignment:
Q  92 gtccaagacgattgtacattgtattttttcatcacccatatttcaa 137  Q
    |||||||| |||||||| ||||||| ||||||||||| ||||||||    
T  47208283 gtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 7766064 - 7765992
Alignment:
Q  76 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 148  Q
    |||||| || ||||| ||||| ||||| |  || ||||||| |||||||||||||||||||| |||| |||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcatta 7765992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 7786886 - 7786814
Alignment:
Q  76 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccatta 148  Q
    |||||| ||||||||  |||||||  | || || ||||||| |||||||||||||||||||| |||| |||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcatta 7786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 7813902 - 7813838
Alignment:
Q  73 agaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 137  Q
    ||||||||| ||||| ||  |||||||||| || || ||||||| ||||| ||||||||||||||    
T  7813902 agaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 21016303 - 21016180
Alignment:
Q  16 atcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtat 115  Q
    ||||||||||||||||||| || | ||| | || ||  || ||||||||||| ||| ||| | |   |||||||| ||||||||||| ||||| ||||||    
T  21016303 atcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtat 21016204  T
Q  116 tttttcatcacccatatttcaact 139  Q
    | |||||| |||||||||||||||    
T  21016203 tctttcataacccatatttcaact 21016180  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 47451508 - 47451612
Alignment:
Q  45 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtacc 144  Q
    ||||||| |||  ||||||| || ||| || |||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || |    
T  47451508 aaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatc 47451607  T
Q  145 attat 149  Q
    |||||    
T  47451608 attat 47451612  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 11024149 - 11024203
Alignment:
Q  83 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 137  Q
    |||||||| ||||||||||| || || ||||||| |||||| |||||||||||||    
T  11024149 agagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 11015148 - 11015200
Alignment:
Q  94 ccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccat 146  Q
    ||||||||| || || ||||||| |||||| ||||||||||||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccat 11015200  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 12195739 - 12195671
Alignment:
Q  83 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 151  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12195739 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12195671  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 12440167 - 12440099
Alignment:
Q  83 agagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaactgtaccattatca 151  Q
    |||||||| |||||||| ||||||   ||||||| ||||||| |||||||||||||||| | |||||||    
T  12440167 agagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatca 12440099  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 15349305 - 15349244
Alignment:
Q  76 aagaacgagagtctttgtccaagacgattgtacattgtattttttcatcacccatatttcaa 137  Q
    |||||| ||| ||||||||||||| || |  || ||||||| ||||||||||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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