View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10259_low_5 (Length: 343)

Name: NF10259_low_5
Description: NF10259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10259_low_5
NF10259_low_5
[»] chr4 (3 HSPs)
chr4 (19-343)||(24728079-24728403)
chr4 (23-332)||(24688583-24688892)
chr4 (23-235)||(24718986-24719210)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 24728403 - 24728079
Alignment:
Q  19 caatctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  24728403 caatctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcggcattcttcatttccctatacttagcagcccagtcacgt 24728304  T
Q  119 tgattttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcacttctttcttccatg 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24728303 tggttttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcagttggtgtcaaatgatagtgagacatcacttctttcttccatg 24728204  T
Q  219 tttcattctttgatgcccatagctcgtaccgaaacgtatgtgattgaggaagattgttcatgcattctttgccagcaacacaaccaaacagcataatggc 318  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24728203 tttcattctttgatgcccacagctcgtaccgaaatgtatgtgattgaggaagattgttcatgcattctttgccagcaacacaaccaaacagcataatggc 24728104  T
Q  319 cataaacataaacacaaaaaccttc 343  Q
    |||||||||||||||||||||||||    
T  24728103 cataaacataaacacaaaaaccttc 24728079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 24688892 - 24688583
Alignment:
Q  23 ctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgat 122  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||| ||| | |   |||||| |||| ||||||| |   |||||||||| |||| |    
T  24688892 ctcacatccccaagtggcacttctttcagaaatcccactggtggcttaaacacacccaaattcttgattttcctatacattaaagcccaatcatgttggt 24688793  T
Q  123 tttcttccgataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgagacatcacttctttcttccatgtttc 222  Q
    ||||||| ||||| | ||||||||||||||||  ||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||    
T  24688792 tttcttctgataagatcttccttggaagcaaagttgcccaagcagattcatcagttggtgtcacatgataatgagacatcacttctttcttccatgtctc 24688693  T
Q  223 attctttgatgcccatagctcgtaccgaaacgtatgtgattgaggaagattgttcatgcattctttgccagcaacacaaccaaacagcataatggccata 322  Q
    ||||||||||||  ||||||| ||||||||||||||||| ||||   || ||||  ||||||| ||   || ||||||||||  ||||||||  ||||||    
T  24688692 attctttgatgcaaatagctcataccgaaacgtatgtgactgagtcggaatgttagtgcattccttaatagtaacacaaccacgcagcataagtgccata 24688593  T
Q  323 aacataaaca 332  Q
    ||||||||||    
T  24688592 aacataaaca 24688583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 24719210 - 24718986
Alignment:
Q  23 ctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgat 122  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |    
T  24719210 ctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcggcattcttcatttccctatacttagcagcccaatcacgttggt 24719111  T
Q  123 tttcttccg---ataaaagcttccttggaagcaaatctgcccaagccgattcatcggttggtgtcaaatgatagtgaga---------catcacttcttt 210  Q
    ||||||  |   | || | || | |||||| ||  |||  ||||||||||||||||| |||||||| ||||   |||||         ||||||||||||    
T  24719110 tttcttgtgttaagaacatctcctttggaatcatttcttgccaagccgattcatcggatggtgtcacatgaacatgagactgatacatcatcacttcttt 24719011  T
Q  211 cttccatgtttcattctttgatgcc 235  Q
    ||||||||| |||||||||||||||    
T  24719010 cttccatgtctcattctttgatgcc 24718986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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