View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1025_high_1 (Length: 507)
Name: NF1025_high_1
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 76 - 497
Target Start/End: Complemental strand, 32956716 - 32956295
Alignment:
| Q |
76 |
ggaggaacatgcacatgtggtatgtttcatcctcaaacaaattctaattactctttgctttactctaactaccaacaacatgatcattacgattttgacc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32956716 |
ggaggaacatgcacatgtggtatgtttcatcctcaaacaaattctaactactctttgatttactctaactaccaacaacatgatcattgcgattttgacc |
32956617 |
T |
|
| Q |
176 |
cttactcatacactactccannnnnnnnnnnnnnnnnnnnngttgattgcacactctcccttgctaccccttccacacgtttatctgaagaccaagataa |
275 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32956616 |
cttactcatacactactccatcttcttcttcttcttcttctgttgattgcacactctcccttgctaccccttccacacgtttatctgaagaccaagataa |
32956517 |
T |
|
| Q |
276 |
acgaaaccgtcgctcttctcttgctaattttttctgtaccaaatcttcaaacactaaacataattctcaatctcaatccaagtcaaacaatattggtagt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32956516 |
acgaaaccgtcgctcttctcttgctaattttttctgtaccaaatcttcaaacactaaacataattctcaatctcaatccaagtcaaacaatattggtagt |
32956417 |
T |
|
| Q |
376 |
aactctaacaatgattctcttcttgctcgtcgatgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaaa |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32956416 |
aactctaacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaaa |
32956317 |
T |
|
| Q |
476 |
tacattaccaataccacctttg |
497 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
32956316 |
tacattaccaataccatctttg |
32956295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 475
Target Start/End: Original strand, 7723517 - 7723610
Alignment:
| Q |
382 |
aacaatgattctcttcttgctcgtcgatgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggtaaaaa |
475 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||||| |||| || ||||| ||||||||||| || ||||| ||||| |||||||||| |
|
|
| T |
7723517 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggtaaaaa |
7723610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University