View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1025_low_1 (Length: 1031)
Name: NF1025_low_1
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 781; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 1 - 899
Target Start/End: Complemental strand, 8015610 - 8014719
Alignment:
| Q |
1 |
gtatagaagtagaatagaatcaaaactgctctaacaactggcgtactgaaattgtattattggacctgctgctatctactctcctccagtatctctttgc |
100 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8015610 |
gtattgaagtagaacagaatcaaaactgctctaacaactggcgtactgaaattgtattattggacctgctgctatctactctcctccagtatctctttgc |
8015511 |
T |
|
| Q |
101 |
agtatttgcttcttttcaattcaaaaagtggttttattcg---acacatcatatatacgtacttttatttatttgtggtatttataatatgcattggtta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8015510 |
agtatttgcttcttttcaattcaaaaagtggttttattcgtatacacatcatatatacgtacttttatttatttgtggtatttataatatgcattggtta |
8015411 |
T |
|
| Q |
198 |
tttatcagttcattttaattagtcaagaaataagttatgagaatatgcgtgaaagagtagttgttagataagatgtggcatttcacgtgagcctatgaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8015410 |
tttatcagttcattttaattagtcaagaaataagttatgagaatatgcgtgaaagagtagttgttagataagatgtggcatttcacgtgagcctctgaat |
8015311 |
T |
|
| Q |
298 |
cagcttaaagtaccatcactcgtgcattctttttcttcaatattcaaagaaaaggacggtaatgtactaaattacttgttcaaattctgtgcccaaaacc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8015310 |
cagcttaaagtaccatcactcgtgcattctttttcttcaa---tcaaagaaaaggacggtaatgtactaaattacttgttcaaattctgtgcccaaaacc |
8015214 |
T |
|
| Q |
398 |
aagcaaataaatgtcatgagttggtaacatttgctgcaccttgacttcgagacttattttcaagttaaatctgactgaatttgacgatgcttgtaattgt |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8015213 |
aagcaaataaatgtcatgagttggtaacatttgctgcaccttgactttgagacttattttcaagttaaatctgactgaatttgacgatgcttgtaattgt |
8015114 |
T |
|
| Q |
498 |
atatgtaaattgtaataactatagttctgtctagtagnnnnnnnncttcttaattacctaccctatgtctcatagctttccatggccacataaatcaccc |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8015113 |
atatgtaaattgtaataactatagttctgtctcgtagttttttt--ttctt-cttacctactctatgtctcatagctttccatggccacataaatcaccc |
8015017 |
T |
|
| Q |
598 |
aattcagatatttgtagcccaagatatatggtcttcacaagatctaaatgtcaagtaaaaataaaatttgaaaattacccaatttaacaatatttaagcc |
697 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8015016 |
aattcagatatttgcagcccaagatatatggtcttcacaagatctaaatgtcaagtaaaaataaaatttgaaaattacccaatttaacaatatttaagcc |
8014917 |
T |
|
| Q |
698 |
ctatgaagtcaacaaatccaaaacacattcagtacttttaatatttagtccataaaggaagtatttagaccaaatctaaagtagtgtataaagcacatca |
797 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8014916 |
ctatgaagtcaacaaatgcaaaacacattcagtacttttaatatttagtccata----aagtatttagaccaaatctaaagtagtgtataaagcacatca |
8014821 |
T |
|
| Q |
798 |
aaatcaatttatcatcaaccaactaatagtcataggatacagatgttattgtattcttcattaacataatacaattatggttttaaactatgatgatgtc |
897 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8014820 |
aaatcaatttatcatcaaccaactaatagtcataggatacagatgttattgtattcttcattaacataatacaattatggttttaaactatgatgatgtc |
8014721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 996 - 1031
Target Start/End: Complemental strand, 6037881 - 6037846
Alignment:
| Q |
996 |
ttgatattgacactcacatcagtctactcatttttc |
1031 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
6037881 |
ttgatattgacaatcacatcagtctactcatttttc |
6037846 |
T |
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