View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1025_low_19 (Length: 254)

Name: NF1025_low_19
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1025_low_19
NF1025_low_19
[»] chr8 (16 HSPs)
chr8 (1-247)||(12177078-12177324)
chr8 (1-247)||(12421506-12421752)
chr8 (3-247)||(12188401-12188645)
chr8 (3-247)||(12432829-12433073)
chr8 (4-209)||(32633384-32633589)
chr8 (4-210)||(6310249-6310455)
chr8 (1-129)||(9394244-9394372)
chr8 (4-210)||(5549905-5550111)
chr8 (25-198)||(13165009-13165182)
chr8 (4-141)||(14404902-14405039)
chr8 (4-210)||(5607818-5608024)
chr8 (4-210)||(5627346-5627552)
chr8 (22-150)||(5571548-5571676)
chr8 (6-65)||(5649855-5649914)
chr8 (6-65)||(5603257-5603316)
chr8 (6-65)||(5632054-5632113)
[»] scaffold0363 (1 HSPs)
scaffold0363 (4-141)||(13814-13951)
[»] chr2 (1 HSPs)
chr2 (17-98)||(19492815-19492896)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 12177078 - 12177324
Alignment:
Q  1 tctagaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  12177078 tctagaagttctaaagtacgaacatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaa 12177177  T
Q  101 taccaagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaact 200  Q
    ||  |||||||| |||||  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12177178 tatgaagatcttcccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaact 12177277  T
Q  201 accttcatatacggaagataccttctgaaatatggcaacagctaggg 247  Q
    ||||||||| | ||||||||||||||||||||||||| |||| ||||    
T  12177278 accttcatacatggaagataccttctgaaatatggcagcagcaaggg 12177324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 12421506 - 12421752
Alignment:
Q  1 tctagaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  12421506 tctagaagttctaaagtacgaacatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaa 12421605  T
Q  101 taccaagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaact 200  Q
    ||  |||||||| |||||  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12421606 tatgaagatcttcccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaact 12421705  T
Q  201 accttcatatacggaagataccttctgaaatatggcaacagctaggg 247  Q
    ||||||||| | ||||||||||||||||||||||||| |||| ||||    
T  12421706 accttcatacatggaagataccttctgaaatatggcagcagcaaggg 12421752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 12188401 - 12188645
Alignment:
Q  3 tagaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaata 102  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||    
T  12188401 tagaagttctaaaatacgaacatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaata 12188500  T
Q  103 ccaagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactac 202  Q
      |||||||| |||||  | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  12188501 tgaagatcttcccctagtagcttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactac 12188600  T
Q  203 cttcatatacggaagataccttctgaaatatggcaacagctaggg 247  Q
    ||||||||  ||||||||||||||||||||||||| |||| ||||    
T  12188601 cttcatatctggaagataccttctgaaatatggcagcagcaaggg 12188645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 12432829 - 12433073
Alignment:
Q  3 tagaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaata 102  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||    
T  12432829 tagaagttctaaaatacgaacatcatctagtacaatgaaagctttcatgcgtttgagtcttttcataaccatagatgatattactttaggagtctcaata 12432928  T
Q  103 ccaagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactac 202  Q
      |||||||| |||||  | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  12432929 tgaagatcttcccctagtagcttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactac 12433028  T
Q  203 cttcatatacggaagataccttctgaaatatggcaacagctaggg 247  Q
    ||||||||  ||||||||||||||||||||||||| |||| ||||    
T  12433029 cttcatatctggaagataccttctgaaatatggcagcagcaaggg 12433073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 32633589 - 32633384
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    |||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |  || |||||||||||||| | ||  ||||||     
T  32633589 agaagttccaaagtatgaacatcatctagtacaatgaaagatttcatgcgtttgagtcttctcatgatcatggatggtattactttggcagattcaatat 32633490  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactacc 203  Q
    ||||||||| || ||  |||||||||| |||| ||||| || || || |||  ||| | || |||||| ||||||| |||||||||| ||||||||| ||    
T  32633489 caagatcttcccttagtaacttagaaagaagtttgttgcatatgaaattgattccatgcctttttgatacttctgtcacattttctaagaagcaactgcc 32633390  T
Q  204 ttcata 209  Q
    ||||||    
T  32633389 ttcata 32633384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 6310249 - 6310455
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    ||||||||| || || | ||||||||||  |||||||||| |||||||||||||||||||||||| |  || |||||||||| ||| | ||| ||||||     
T  6310249 agaagttctgaattatgtacatcatctattacaatgaaagatttcatgcgtttgagtcttctcatgatcattgatggtattaatttggaagtatcaatat 6310348  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactacc 203  Q
    ||||||||| ||  |  ||||| |||| |||| ||||| |||||||| ||| |||| ||||||||||| ||||||| || ||||||| ||||||||| ||    
T  6310349 caagatcttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgttaccttttctaagaagcaactgcc 6310448  T
Q  204 ttcatat 210  Q
    |||||||    
T  6310449 ttcatat 6310455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 9394244 - 9394372
Alignment:
Q  1 tctagaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaa 100  Q
    |||||||||| ||||||| |||  || ||||| |||||||||||||||||| |||||||||||  |||||| ||||||| ||||||||| ||||||||||    
T  9394244 tctagaagttttaaagtatgaatgtcgtctagtacaatgaaagctttcatgtgtttgagtctttacataaccatagatgatattactttgggagtgtcaa 9394343  T
Q  101 taccaagatcttgccctaccaacttagaa 129  Q
    |||||||||||| | |||  |||||||||    
T  9394344 taccaagatcttccgctattaacttagaa 9394372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 5550111 - 5549905
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    ||||||||| || || | ||||||||||| |||||||||| |||||||| ||||||||||||  | |  || |||| ||||| ||| ||||||||||||     
T  5550111 agaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatat 5550012  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactacc 203  Q
    |||||||||    ||  |||||||||| |||| ||||| |||||||| |||  ||||| || |||||| ||||||| || ||||| | ||||||||| ||    
T  5550011 caagatcttcttttagtaacttagaaagaagtttgttgcatgtgtaattgattccacgactttttgatacttctgtaaccttttcaaagaagcaactgcc 5549912  T
Q  204 ttcatat 210  Q
     ||||||    
T  5549911 atcatat 5549905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 13165182 - 13165009
Alignment:
Q  25 tcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaataccaagatcttgccctaccaact 124  Q
    |||||||| |||||||||| |||||||||||||||||||||| | |  || ||||||||||||||  |||||  |||| |||| |||| |||||  ||||    
T  13165182 tcatctagtacaatgaaagatttcatgcgtttgagtcttctcctgatcatggatggtattactttgagagtggtaatatcaaggtcttcccctagtaact 13165083  T
Q  125 tagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaa 198  Q
    | |||| |||| ||||| |||||| | |||  ||| |  | | ||||| |||||| |||||||||| |||||||    
T  13165082 tggaaagaagtttgttgcatgtgtcattgattccatgcttttctgattgttctgtcacattttctaagaagcaa 13165009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 14405039 - 14404902
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    ||||||||| || || | ||||||||||| |||||||||| |||||||| ||||||||||||  | |  ||||||||||||| ||| ||| ||||||||     
T  14405039 agaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatagatggtattagtttgggactgtcaatat 14404940  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttg 141  Q
    ||||||||| || ||  ||||| |||| |||| |||||    
T  14404939 caagatcttcccttagtaacttggaaagaagtttgttg 14404902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 5607818 - 5608024
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    ||||||||| || || | ||||||||||| |||||||||| |||||||| ||||||||||||  | |  || |||| ||||| ||| ||||||||||||     
T  5607818 agaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatat 5607917  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactacc 203  Q
    |||||||||    ||  |||||| ||| |||| ||||| |||||||| |||  ||| | || |||||| ||||||| || || || | ||||||||| ||    
T  5607918 caagatcttcttttagtaacttacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgcc 5608017  T
Q  204 ttcatat 210  Q
     ||||||    
T  5608018 atcatat 5608024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 5627552 - 5627346
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    ||||||||| || || | ||||||||||| |||||||||| |||||||| ||||||||||||  | |  || |||| ||||| ||| ||||||||||||     
T  5627552 agaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatggatgatattagtttgggagtgtcaatat 5627453  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttgtatgtgtaactgagcccacgtctctttgattcttctgtgacattttctaggaagcaactacc 203  Q
    |||||||||    ||  |||||| ||| |||| ||||| |||||||| |||  ||| | || |||||| ||||||| || || || | ||||||||| ||    
T  5627452 caagatcttcttttagtaacttacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgcc 5627353  T
Q  204 ttcatat 210  Q
     ||||||    
T  5627352 atcatat 5627346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 5571676 - 5571548
Alignment:
Q  22 acatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaataccaagatcttgccctacca 121  Q
    ||||||||||  |||||||||| ||||||  || ||||||||||| | |  || | ||| |||||||| ||||||||||||| |||||||| |||||  |    
T  5571676 acatcatctaatacaatgaaagatttcatatgtctgagtcttctcttgatcatggctgggattactttgggagtgtcaatacgaagatcttcccctagta 5571577  T
Q  122 acttagaaacaagtctgttgtatgtgtaa 150  Q
    |||| |||| |||| ||||| | ||||||    
T  5571576 acttggaaagaagtttgttgcacgtgtaa 5571548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 5649914 - 5649855
Alignment:
Q  6 aagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttct 65  Q
    ||||||| ||||||| ||||||||||  |||||||||||||| |||| ||||||||||||    
T  5649914 aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttct 5649855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 5603257 - 5603316
Alignment:
Q  6 aagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttct 65  Q
    ||||||| ||||||| ||||||||||  |||| ||||||||| |||| ||||||||||||    
T  5603257 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttct 5603316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 5632113 - 5632054
Alignment:
Q  6 aagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttct 65  Q
    ||||||| ||||||| ||||||||||  |||| ||||||||| |||| ||||||||||||    
T  5632113 aagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttct 5632054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 13814 - 13951
Alignment:
Q  4 agaagttctaaagtacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtcaatac 103  Q
    ||||||||| || || | ||||||||||| |||||||||| |||||||| ||||||||||||  | |  ||||||||||||| ||| ||| ||||||||     
T  13814 agaagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttcttctgatcatagatggtattagtttgggactgtcaatat 13913  T
Q  104 caagatcttgccctaccaacttagaaacaagtctgttg 141  Q
    ||||||||| || ||  ||||| |||| |||| |||||    
T  13914 caagatcttcccttagtaacttggaaagaagtttgttg 13951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 19492815 - 19492896
Alignment:
Q  17 tacgaacatcatctagaacaatgaaagctttcatgcgtttgagtcttctcataacgatagatggtattactttaggagtgtc 98  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||| || || || ||||  |||||| |||| |||||    
T  19492815 tacgaacatcatctagtacaatgaaagctttcattcctttgagtcttctaatgaccatggatgacattactataggcgtgtc 19492896  T

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