View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1025_low_2 (Length: 786)

Name: NF1025_low_2
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1025_low_2
NF1025_low_2
[»] chr3 (9 HSPs)
chr3 (1-647)||(31423810-31424449)
chr3 (271-487)||(24712244-24712462)
chr3 (36-269)||(24712584-24712818)
chr3 (146-188)||(5556596-5556638)
chr3 (146-203)||(17550968-17551025)
chr3 (146-203)||(19176513-19176570)
chr3 (160-227)||(24099354-24099421)
chr3 (146-185)||(43012404-43012443)
chr3 (160-217)||(30127259-30127316)
[»] chr8 (14 HSPs)
chr8 (13-254)||(17819683-17819925)
chr8 (121-254)||(3679406-3679539)
chr8 (313-543)||(31503540-31503772)
chr8 (386-483)||(3679052-3679149)
chr8 (276-374)||(17820059-17820158)
chr8 (146-251)||(30236141-30236246)
chr8 (146-203)||(24995408-24995465)
chr8 (146-203)||(31207375-31207432)
chr8 (146-203)||(37986871-37986928)
chr8 (146-185)||(16457474-16457513)
chr8 (146-185)||(32945716-32945755)
chr8 (146-184)||(9519529-9519567)
chr8 (146-183)||(15906717-15906754)
chr8 (154-203)||(41893421-41893470)
[»] chr6 (10 HSPs)
chr6 (57-185)||(32316397-32316527)
chr6 (313-408)||(5746424-5746519)
chr6 (160-227)||(34105400-34105467)
chr6 (146-188)||(33968626-33968668)
chr6 (90-184)||(5746627-5746722)
chr6 (146-203)||(32935352-32935409)
chr6 (92-232)||(34092777-34092917)
chr6 (149-188)||(9224067-9224106)
chr6 (90-184)||(15487690-15487782)
chr6 (208-269)||(15487622-15487682)
[»] chr1 (11 HSPs)
chr1 (46-186)||(9613323-9613466)
chr1 (148-203)||(46603403-46603458)
chr1 (146-203)||(19598647-19598704)
chr1 (146-203)||(31585773-31585830)
chr1 (154-203)||(38544759-38544808)
chr1 (146-203)||(41920463-41920520)
chr1 (146-185)||(5389434-5389473)
chr1 (161-240)||(24658903-24658982)
chr1 (146-216)||(15840925-15840995)
chr1 (146-203)||(5459172-5459229)
chr1 (146-203)||(17033597-17033654)
[»] chr4 (6 HSPs)
chr4 (146-269)||(6599958-6600081)
chr4 (160-230)||(39041301-39041371)
chr4 (146-203)||(46698798-46698855)
chr4 (150-188)||(35800515-35800553)
chr4 (146-232)||(36962629-36962714)
chr4 (154-203)||(53823442-53823491)
[»] chr2 (8 HSPs)
chr2 (146-204)||(4471933-4471991)
chr2 (146-203)||(39338878-39338935)
chr2 (162-269)||(23650331-23650437)
chr2 (146-203)||(22885146-22885203)
chr2 (146-203)||(31902427-31902484)
chr2 (90-256)||(36276131-36276295)
chr2 (149-203)||(33788648-33788702)
chr2 (154-203)||(16959993-16960042)
[»] scaffold0620 (2 HSPs)
scaffold0620 (160-227)||(3817-3884)
scaffold0620 (92-232)||(8111-8251)
[»] chr7 (12 HSPs)
chr7 (146-188)||(11379140-11379182)
chr7 (146-188)||(12480912-12480954)
chr7 (441-487)||(26386589-26386635)
chr7 (146-203)||(13311850-13311907)
chr7 (90-201)||(2613823-2613935)
chr7 (161-237)||(34389939-34390015)
chr7 (146-185)||(10244211-10244250)
chr7 (113-256)||(43344861-43345003)
chr7 (146-184)||(37795019-37795057)
chr7 (154-203)||(6716757-6716806)
chr7 (146-203)||(38306272-38306329)
chr7 (146-203)||(47325898-47325955)
[»] chr5 (5 HSPs)
chr5 (446-488)||(25658554-25658596)
chr5 (155-203)||(25992018-25992066)
chr5 (146-256)||(25658166-25658276)
chr5 (153-203)||(34378109-34378159)
chr5 (146-188)||(39024463-39024505)
[»] scaffold1613 (1 HSPs)
scaffold1613 (154-203)||(1038-1087)


Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Complemental strand, 31424449 - 31423810
Alignment:
Q  1 aaaaacacccccctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcctccacctctcta 100  Q
    ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  31424449 aaaaacacccctctaaatcaaccaacaccttatcatcaccttagttgagccacatccaaaaatgtcctattccaacgcttagtcggcctccacctctcta 31424350  T
Q  101 ctcctgatccgccgaagaaaaaacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccag 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31424349 ctcctgatccaccgaagaaaaaacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgaccggcctaccag 31424250  T
Q  201 actctgaaaacaaatcagtaaggcacctctcacccccgatcaaccggagaagacacgaagactagccaacatcagaaaaggaaaaggctcaactcaaaac 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424249 actctgaaaacaaatcagtaaggcacccctcacccccgatcaaccggagaagacacgaagactagccaacatcagaaaaggaaaaggctcaactcaaaac 31424150  T
Q  301 cacccagactcaagcacccatacacaaaacaaccaaaaggcaccaagagctagcgacgacggatacagacccaagacaaaggcagcctacaacagaaaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31424149 cacccagactcaagcacccatacacaaaacaaccaaaaggcaccaagagctagcgacgatggatacagacccaagacaaaggcagcctacaacagaaaca 31424050  T
Q  401 ccaagagtacactaccatccaccaaaacaccaaaaaacatccacctccctacctaaacaacatcaaccacccccacttaatcagctcttgtctatcaatc 500  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424049 ccaagagtacactaccatccacca-------aaaaaacatccacctccctacctaaacaacatcaaccacccccacttaatcagctcttgtctatcaatc 31423957  T
Q  501 gtatcaatgccaaatcggagtcaaaattatccacgaccaccccatccgaacgctacaaaccatcacacacaactacacaaacctacgcaaccatctcgct 600  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  31423956 gtatcaatgccaaatcggagtccaaattatccacaatcaccccatccgaacgctacaaaccatcacacaccactacacaaacctacacaaccatctcgct 31423857  T
Q  601 ccaccgctaacagtaccacaccaaacaaccacacaaaaccaacgtga 647  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  31423856 ccactgctaacagtaccacaccaaacaaccacacaaaaccaacgtga 31423810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 271 - 487
Target Start/End: Complemental strand, 24712462 - 24712244
Alignment:
Q  271 atcagaaaaggaaaaggctcaactc-aaaaccacccagactcaagcacccatacacaaaa-caaccaaaaggcaccaagagctagcgacgacggatacag 368  Q
    |||||| |||||||||||||| ||| ||||||||||  ||||||||| ||| |||||||| |||| ||||| |||||||||||||||||||||||||  |    
T  24712462 atcagagaaggaaaaggctcagctcgaaaaccacccgcactcaagcaaccaaacacaaaatcaactaaaag-caccaagagctagcgacgacggatatgg 24712364  T
Q  369 acccaaga-caaaggcagcctacaacagaaacaccaagagtacactaccatccaccaaaacaccaa-aaaacatccacctccctacctaaacaacatcaa 466  Q
    |||||| | |||||||||||||||||||||||||||||||  |||||||| |||| | |||||||| |||||||||||||||||||||||| ||| || |    
T  24712363 acccaaaaacaaaggcagcctacaacagaaacaccaagagctcactaccacccacaacaacaccaataaaacatccacctccctacctaaaaaacgtcta 24712264  T
Q  467 ccacccccacttaatcagctc 487  Q
    ||| |||||||||||||||||    
T  24712263 cca-ccccacttaatcagctc 24712244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 24712818 - 24712584
Alignment:
Q  36 tcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcctc---cacctctctactcctgatccgccgaagaaaaaacaccaaatt 132  Q
    ||||||| | ||||||||| || |||||| ||||||||||  |||||||||||||   |||| |||||| |||||||| |||||| ||||||||| || |    
T  24712818 tcacctttgctgagccacacccgaaaatgacatattccaatgcttagtcggcctccaccaccgctctacccctgatccaccgaag-aaaaacaccgaaat 24712720  T
Q  133 tagcccaaagga-gacttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctc 231  Q
    |||||||||| |  ||||||||||||||||||||| |||||||||||| ||||  ||| |||| |||| ||||   |||||||||||||||||||| |||    
T  24712719 tagcccaaagcacaacttgaatcaaagcactgact-ccgatctcgaataaaaaatgaccggcccaccatactccagaaacaaatcagtaaggcacccctc 24712621  T
Q  232 acccccgatcaaccggagaagacacgaagactagccaa 269  Q
    | ||||||||||||||||||||||| | ||| ||||||    
T  24712620 a-ccccgatcaaccggagaagacaccatgaccagccaa 24712584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 5556638 - 5556596
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  5556638 acttgaaccaaagaactgactcccgatctcgaatcaaaagcga 5556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 17551025 - 17550968
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  17551025 acttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 17550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 19176570 - 19176513
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  19176570 acttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 19176513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 24099354 - 24099421
Alignment:
Q  160 actgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacc 227  Q
    ||||| ||||||| |||||||||||| ||  |||| ||||||||||  |||||||||| |||||||||    
T  24099354 actgattcccgatatcgaatcaaaagtgatcggcccaccagactctataaacaaatcattaaggcacc 24099421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 43012443 - 43012404
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaag 185  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  43012443 acttgagtcaaagaactgactcccgatctcgaatcaaaag 43012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 30127316 - 30127259
Alignment:
Q  160 actgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatca 217  Q
    |||||||||||||||||||||||||||||  |||  |||||||||   ||||||||||    
T  30127316 actgactcccgatctcgaatcaaaagcgatcggctcaccagactcccgaaacaaatca 30127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 17819683 - 17819925
Alignment:
Q  13 ctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcct--ccacctctctactcctgatcc 110  Q
    ||||||||||||||  ||| || ||||||||| ||||||| | ||||||||| |||||| |||  |||||||||||   || || |||| | || |||||    
T  17819683 ctaaatcaaacaacctcttctcgtcaccttagctgagccatacccaaaaatgacatatttcaatgcttagtcggccatccccccgctctccccccgatcc 17819782  T
Q  111 gccgaagaaaaaacaccaaatttagcccaaaggaga-cttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaa 209  Q
     || ||||||||||  |||| ||||||||||| | | |||||||||||| || |||| | |||||  |||||||| | |   ||| |||||||||   ||    
T  17819783 accaaagaaaaaac--caaaattagcccaaagcaaaacttgaatcaaagtacggactactgatcttaaatcaaaaacaatcagcccaccagactccataa 17819880  T
Q  210 acaaatcagtaaggcacctctcacccccgatcaaccggagaagac 254  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||    
T  17819881 acaaatcagtaaggcacccctcacccccaatctaccggagaagac 17819925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 121 - 254
Target Start/End: Complemental strand, 3679539 - 3679406
Alignment:
Q  121 aaacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagta 220  Q
    |||||||| | ||| ||||||| | |||||||||||||||| ||||||||||||||||||||||| ||   |||    |||||||  |||||||||||||    
T  3679539 aaacaccataattatcccaaagcaaacttgaatcaaagcaccgactcccgatctcgaatcaaaagtgataagccagttagactctagaaacaaatcagta 3679440  T
Q  221 aggcacctctcacccccgatcaaccggagaagac 254  Q
    | | ||| ||||||| ||||||||||||||||||    
T  3679439 aagtacccctcaccctcgatcaaccggagaagac 3679406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 313 - 543
Target Start/End: Original strand, 31503540 - 31503772
Alignment:
Q  313 agcacccatacacaaaa-caaccaaaaggcaccaagagctagcgacgacggatacagacccaagacaaaggcagcctacaacagaaacaccaagagtaca 411  Q
    |||||||| | |||||| ||||||||| ||| ||||||||||||| | ||||||  ||| ||| ||| |||| ||  |||| ||||||| | ||||  ||    
T  31503540 agcacccaaatacaaaagcaaccaaaatgcaacaagagctagcgatggcggatatggactcaaaacagaggcggcaaacaatagaaacatctagagctca 31503639  T
Q  412 ctaccatccaccaaaacacca-aaaaacatccacctccctacctaaacaacatcaaccacccccacttaatcagctcttgtctatcaatcgtatcaatgc 510  Q
    | ||||||||||||||||||| |||||||||||||| ||||||||| |||  || |||| ||||  |||||||||||| ||| |||||  || || |       
T  31503640 ccaccatccaccaaaacaccataaaaacatccaccttcctacctaaccaatgtctaccatcccctgttaatcagctctcgtccatcaaatgtttcgactt 31503739  T
Q  511 caaatcggagtcaaaattatccacgaccacccc 543  Q
    || ||| ||||| | ||||||||||||||||||    
T  31503740 cagatctgagtctagattatccacgaccacccc 31503772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 386 - 483
Target Start/End: Complemental strand, 3679149 - 3679052
Alignment:
Q  386 cctacaacagaaacaccaagagtacactaccatccaccaaaacaccaaaaaacatccacctccctacctaaacaacatcaaccacccccacttaatca 483  Q
    ||||||||||||||||||| ||  ||| |||| |||| |||||| ||  |||||| |||||||||||||||||||| || ||||||||| ||||||||    
T  3679149 cctacaacagaaacaccaatagctcaccaccacccacaaaaacatcattaaacattcacctccctacctaaacaacgtctaccaccccctcttaatca 3679052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 17820059 - 17820158
Alignment:
Q  276 aaaaggaaaaggctcaactc-aaaaccacccagactcaagcacccatacacaaaa-caaccaaaaggcaccaagagctagcgacgacggatacagaccca 373  Q
    |||||||||||||| | ||| ||||||||||| |||||||| |||| |||||||| ||||||||| |||||||||| |||||||||| ||||  ||||||    
T  17820059 aaaaggaaaaggctaagctcgaaaaccacccacactcaagctcccaaacacaaaatcaaccaaaa-gcaccaagagttagcgacgacagatatggaccca 17820157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 30236141 - 30236246
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctcacccccgatcaacc 245  Q
    ||||||| ||||| |||||||||||||||||||||||||||||  | || ||||||||   ||| |||||||| | |||||| || ||||||| || |||    
T  30236141 acttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcgtcccaccagacttcaaaaccaaatcagaagggcaccccttacccccggtccacc 30236240  T
Q  246 ggagaa 251  Q
     |||||    
T  30236241 agagaa 30236246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 24995408 - 24995465
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  24995408 acttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 24995465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 31207375 - 31207432
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  31207375 acttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 31207432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 37986871 - 37986928
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||  || ||||| ||||||||    
T  37986871 acttgagtcaaagaactgactcccgatctcgaatcaaaaatgattggcccaccagact 37986928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 16457474 - 16457513
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaag 185  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  16457474 acttgagtcaaagaactgactcccgatctcgaatcaaaag 16457513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 32945716 - 32945755
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaag 185  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  32945716 acttgaatcaaagaattgactcccgatctcgaatcaaaag 32945755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 9519567 - 9519529
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaa 184  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  9519567 acttgagtcaaagaactgactcccgatctcgaatcaaaa 9519529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 15906754 - 15906717
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaa 183  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  15906754 acttgaaccaaagaactgactcccgatctcgaatcaaa 15906717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 41893421 - 41893470
Alignment:
Q  154 caaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| |||||||||||||||||||||||||| |  ||||| ||||||||    
T  41893421 caaagaactgactcccgatctcgaatcaaaagtggttggcccaccagact 41893470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 32316527 - 32316397
Alignment:
Q  57 caaaaatgtcatattccaacccttagtcggcctccacc---tctctactcctgatccgccgaagaaaaaacaccaaatttagcccaaaggagacttgaat 153  Q
    |||||||||| ||||||||| || | ||||||||||||   ||| ||| ||   ||| ||||||||||| ||||| | ||||||||||| | ||||||||    
T  32316527 caaaaatgtcttattccaacgctcattcggcctccaccacctctataccccctgtccaccgaagaaaaa-caccataattagcccaaagtaaacttgaat 32316429  T
Q  154 caaagcactgactcccgatctcgaatcaaaag 185  Q
    ||||| ||| ||| ||||||||||||||||||    
T  32316428 caaagaacttactaccgatctcgaatcaaaag 32316397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 5746519 - 5746424
Alignment:
Q  313 agcacccatacacaaaacaaccaaaaggcaccaagagctagcgacgacggatacagacccaagacaaaggcagcctacaacagaaacaccaagagt 408  Q
    |||||||| ||||||| ||||| ||| ||| ||||||||||||||||||||||  || |||| ||||||||   | ||||||||||||| ||||||    
T  5746519 agcacccaaacacaaagcaacccaaacgcaacaagagctagcgacgacggatatggatccaacacaaaggcgatcaacaacagaaacacaaagagt 5746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 34105467 - 34105400
Alignment:
Q  160 actgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacc 227  Q
    |||||||||||||||||||||||||| ||  |||| |||| |||||  |||||||||| |||||||||    
T  34105467 actgactcccgatctcgaatcaaaagtgatcggcccaccaaactctagaaacaaatcactaaggcacc 34105400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 33968626 - 33968668
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  33968626 acttgaaccaaagaactgactcccgatctcgaatcaaaagcga 33968668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 5746722 - 5746627
Alignment:
Q  90 ccacctctctactcctgatccgccgaagaaaaaacaccaaatttagcccaaaggagacttgaatcaaagcactgac--tcccgatctcgaatcaaaa 184  Q
    |||||||||||| |||||||| ||||||||||||||||| |  ||| |||||| | ||||||||||||| | ||||   | ||||||||||||||||    
T  5746722 ccacctctctacccctgatccaccgaagaaaaaacaccata-ataggccaaagcaaacttgaatcaaagaattgacaacctcgatctcgaatcaaaa 5746627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 32935352 - 32935409
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| || ||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  32935352 acttgagtccaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagact 32935409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 34092917 - 34092777
Alignment:
Q  92 acctctctactcctgatccgccgaagaaaaaa--caccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgac 189  Q
    ||||||||||||| | ||| ||||||||||||  |||| |||| |  |||||| | ||||||||||||| |  |||| || ||||||||||||||| ||     
T  34092917 acctctctactcccggtccaccgaagaaaaaaaacacctaattga--ccaaagcaaacttgaatcaaagaatagacttcctatctcgaatcaaaagtgat 34092820  T
Q  190 tggcctaccagactctgaaaacaaatcagtaaggcacctctca 232  Q
     |||  |||||||||  || |||||||||||| | ||||||||    
T  34092819 cggctcaccagactccaaagacaaatcagtaatgtacctctca 34092777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 9224106 - 9224067
Alignment:
Q  149 tgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  9224106 tgaaccaaagaactgactcccgatctcgaatcaaaagcga 9224067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 15487782 - 15487690
Alignment:
Q  90 ccacctctctactcctgatccgccgaagaaaaaacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaa 184  Q
    ||||||| |||| ||  |||| ||||||||||| ||||||| ||| ||||||| | |||||||||||| ||| ||||||||||||| ||| ||||    
T  15487782 ccacctccctaccccgtatccaccgaagaaaaa-caccaaaattaccccaaagcaaacttgaatcaaa-caccgactcccgatctcaaataaaaa 15487690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 15487682 - 15487622
Alignment:
Q  208 aaacaaatcagtaaggcacctctcacccccgatcaaccggagaagacacgaagactagccaa 269  Q
    |||||||||| ||||| ||||| ||||||||||||||| |||||||||| | ||| ||||||    
T  15487682 aaacaaatcaataaggtacctc-cacccccgatcaaccagagaagacaccatgaccagccaa 15487622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 9613323 - 9613466
Alignment:
Q  46 tgagccacatccaaaaatgtcatattccaacccttagtcggcctccacc---tctctactcctgatccgccgaagaaaaaacaccaaatttagcccaaag 142  Q
    |||||||||||||||||| |  |||| |||| |||||||||||||||||   ||| |||  |  |||| |  |||||||||||||||| | |||  ||||    
T  9613323 tgagccacatccaaaaatattttatttcaacgcttagtcggcctccaccacctctttacctcaaatccactaaagaaaaaacaccaaaataagcgtaaag 9613422  T
Q  143 gagacttgaatcaaagcactgactcccgatctcgaatcaaaagc 186  Q
     | ||||||||||||| || ||||||||||||||||| ||||||    
T  9613423 catacttgaatcaaagtacagactcccgatctcgaataaaaagc 9613466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 46603458 - 46603403
Alignment:
Q  148 ttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||    
T  46603458 ttgaaccaaagaactgactctcgatctcgaatcaaaagcgaatggcccaccagact 46603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 19598704 - 19598647
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||| ||||||||||||||||||||  |||| ||||||||    
T  19598704 acttgagtcaaagaactgactctcgatctcgaatcaaaagcgatcggcccaccagact 19598647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 31585773 - 31585830
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  31585773 acttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 31585830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 38544759 - 38544808
Alignment:
Q  154 caaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  38544759 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagact 38544808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 41920520 - 41920463
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  41920520 acttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 41920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 5389434 - 5389473
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaag 185  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  5389434 acttgagtcaaagaactgactcccgatctcgaatcaaaag 5389473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 24658982 - 24658903
Alignment:
Q  161 ctgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctcacccccgat 240  Q
    ||||||||||||||||||||||||| || ||||| |||||||| |  || |||||||| | |||||| ||  ||||||||    
T  24658982 ctgactcccgatctcgaatcaaaagtgattggcccaccagactttagaaccaaatcagcagggcaccccttgcccccgat 24658903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 15840925 - 15840995
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatc 216  Q
    |||||||||||   |||||||||||||||||||||||||| ||   ||| ||||||||||  |||||||||    
T  15840925 acttgaatcaagaaactgactcccgatctcgaatcaaaagtgatcagcccaccagactctagaaacaaatc 15840995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 5459229 - 5459172
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||||||||||  | |||||||||||||||||||||||| ||  |||| ||||||||    
T  5459229 acttgaatcaaataattgactcccgatctcgaatcaaaagtgatcggcccaccagact 5459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 17033654 - 17033597
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||||| ||||| |||||||||||||||||| ||||||| ||  |||| ||||||||    
T  17033654 acttgaaccaaagaactgactcccgatctcgattcaaaagtgatcggcccaccagact 17033597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 6599958 - 6600081
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctcacccccgatcaacc 245  Q
    ||||||||||||| || ||||||||||||| ||||||||||||  |||| ||||||||||  |  |||||||||||||  |  ||||| | ||||| |||    
T  6599958 acttgaatcaaagaaccgactcccgatctctaatcaaaagcgatcggcccaccagactctagagccaaatcagtaaggtcctcctcacgctcgatccacc 6600057  T
Q  246 ggagaagacacgaagactagccaa 269  Q
    | ||||||||| |  |||||||||    
T  6600058 gaagaagacaccataactagccaa 6600081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 39041301 - 39041371
Alignment:
Q  160 actgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctct 230  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||||| |||||||||| ||||||| ||||    
T  39041301 actgactcctgatctcgaatcaaaagtgatcggcccaccagactctgtaaacaaatcattaaggcatctct 39041371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 46698798 - 46698855
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |  |||| ||||||||    
T  46698798 acttgaaccaaagaactgactcccgatctcgaatcaaaagcaatcggcccaccagact 46698855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 35800553 - 35800515
Alignment:
Q  150 gaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  35800553 gaatcaaagaactgacttccgatctcgaatcaaaagcga 35800515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 36962629 - 36962714
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctca 232  Q
    |||||| |||||| ||||||||| ||||||||||||||||  |  |||| |||||||||  ||| ||||||||||||| ||| ||||    
T  36962629 acttgagtcaaag-actgactcctgatctcgaatcaaaagtaatcggcccaccagactccaaaaccaaatcagtaaggtacccctca 36962714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 53823442 - 53823491
Alignment:
Q  154 caaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| |||||||||||||||||||||||||| || ||| | ||||||||    
T  53823442 caaagaactgactcccgatctcgaatcaaaagtgattggtccaccagact 53823491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 4471991 - 4471933
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactc 204  Q
    ||||||||||||| |||||||||||||||||||||||| ||||  |||| |||||||||    
T  4471991 acttgaatcaaagaactgactcccgatctcgaatcaaaggcgatcggcccaccagactc 4471933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 39338878 - 39338935
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  39338878 acttgagtcaaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagact 39338935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 23650437 - 23650331
Alignment:
Q  162 tgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctcacccccgatcaaccggagaagacacgaaga 261  Q
    |||||||||||||||||||||||||||   ||| ||||||||||  || ||||| ||||||| ||| |||| |||||||| |||  ||||||||| |  |    
T  23650437 tgactcccgatctcgaatcaaaagcgatcagcccaccagactctagaaccaaataagtaaggtacccctca-ccccgatccacctaagaagacaccataa 23650339  T
Q  262 ctagccaa 269  Q
    ||||||||    
T  23650338 ctagccaa 23650331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 22885146 - 22885203
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  22885146 acttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 22885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 31902427 - 31902484
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||||| || || |||||||||||||||||||| |||||||| ||||| ||||||||    
T  31902427 acttgaaccagagaactgactcccgatctcgaattaaaagcgattggcccaccagact 31902484  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 36276131 - 36276295
Alignment:
Q  90 ccacctctctactcctgatccgccgaagaaaaaacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgac 189  Q
    ||||||||||||||| || || |||||||||| |||  |||| |  ||||||  | |||||| |||||| | |||||||||||||||||||||||||||     
T  36276131 ccacctctctactccagacccaccgaagaaaagacaataaatat--cccaaaacaaacttgagtcaaag-attgactcccgatctcgaatcaaaagcgaa 36276227  T
Q  190 tggcctaccagactctgaaaacaaatcagtaaggca-cctctcacccccgatcaaccggagaagacac 256  Q
      ||| |||||||||   || |||||||| |||| | ||||||||  ||| || ||| ||||||||||    
T  36276228 cagcccaccagactccataaccaaatcagcaaggtaccctctcacatccggtccaccagagaagacac 36276295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 33788648 - 33788702
Alignment:
Q  149 tgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||| ||||| |||||||||| ||||||||||||||||||  |||| ||||||||    
T  33788648 tgaaccaaagaactgactcccaatctcgaatcaaaagcgatcggcccaccagact 33788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 16960042 - 16959993
Alignment:
Q  154 caaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| |||||||| ||||||||||||||||||||  |||| ||||||||    
T  16960042 caaagaactgactctcgatctcgaatcaaaagcgatcggcccaccagact 16959993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 3884 - 3817
Alignment:
Q  160 actgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacc 227  Q
    |||||||||||||||||||||||||  ||  |||| |||||||||| ||||||||||| | |||||||    
T  3884 actgactcccgatctcgaatcaaaattgatcggcccaccagactctaaaaacaaatcactgaggcacc 3817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 8251 - 8111
Alignment:
Q  92 acctctctactcctgatccgccgaagaaaaaa--caccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgac 189  Q
    ||||||||||||| | ||| ||||||||||||  |||| |||| |  |||||| | ||||||||||||| |  |||| || ||||||||||||||| ||     
T  8251 acctctctactcccggtccaccgaagaaaaaaaacacctaattga--ccaaagcaaacttgaatcaaagaatagacttcctatctcgaatcaaaagtgat 8154  T
Q  190 tggcctaccagactctgaaaacaaatcagtaaggcacctctca 232  Q
     |||  |||||||||  || |||||||||||| | ||||||||    
T  8153 cggctcaccagactccaaagacaaatcagtaatgtacctctca 8111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 11379140 - 11379182
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  11379140 acttgaaccaaagtactgactcccgatctcgaatcaaaagcga 11379182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 12480954 - 12480912
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  12480954 acttgaaccaaagaactgactcccgatctcgaatcaaaagcga 12480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 26386589 - 26386635
Alignment:
Q  441 ccacctccctacctaaacaacatcaaccacccccacttaatcagctc 487  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  26386589 ccacctccttacctaaacaacatctaccaccccctcttaatcagctc 26386635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 13311907 - 13311850
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  13311907 acttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 13311850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 2613823 - 2613935
Alignment:
Q  90 ccacctctctactcctgatccgccgaagaaaaaacaccaaatttagcccaaag-gagacttgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    |||||||||||| |||  ||| |||| |||||||||| | | | || ||||||  | ||||||||||| ||||| ||| |||||||||||||||||| ||    
T  2613823 ccacctctctacccctagtccaccgaggaaaaaacactataataagaccaaagcaaaacttgaatcaaggcactaacttccgatctcgaatcaaaagtga 2613922  T
Q  189 ctggcctaccaga 201  Q
     ||||| ||||||    
T  2613923 ttggccaaccaga 2613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 34390015 - 34389939
Alignment:
Q  161 ctgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctcaccccc 237  Q
    ||||||||||||||||||||||||| ||  |||| |||||||| | ||| |||||||| | |||||  |||||||||    
T  34390015 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactttaaaaccaaatcagcagggcactcctcaccccc 34389939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 10244250 - 10244211
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaag 185  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  10244250 acttgagtcaaagaactgactcccgatctcgaatcaaaag 10244211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 43344861 - 43345003
Alignment:
Q  113 cgaagaaaaaacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaaca 212  Q
    |||||||||||||||| | | || |||||| | ||||| ||| ||| | |||||  | ||||| ||||||||||||| || | ||||||||||  ||  |    
T  43344861 cgaagaaaaaacaccataat-agaccaaagtaaacttggatccaagaattgactttcaatctcaaatcaaaagcgaccggtccaccagactctataacga 43344959  T
Q  213 aatcagtaaggcacctctcacccccgatcaaccggagaagacac 256  Q
    ||||| ||||| ||| |||| |||||||| |||| |||||||||    
T  43344960 aatcaataaggtacccctcatccccgatccaccgaagaagacac 43345003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 37795057 - 37795019
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaa 184  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  37795057 acttgactcaaagaactgactcccgatctcgaatcaaaa 37795019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 6716757 - 6716806
Alignment:
Q  154 caaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  6716757 caaagaactgactcccgatctcgaatcaaaagtgatcggccaaccagact 6716806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 38306329 - 38306272
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||| |||||||||| ||||||||||||||| ||  |||| ||||||||    
T  38306329 acttgagtcaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccagact 38306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 47325898 - 47325955
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| ||||||  ||||||||||||||| ||||||||||||  |||| ||||||||    
T  47325898 acttgagtcaaagagctgactcccgatctcaaatcaaaagcgatcggcccaccagact 47325955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 25658554 - 25658596
Alignment:
Q  446 tccctacctaaacaacatcaaccacccccacttaatcagctct 488  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  25658554 tccctacctaaataacatcaaccaccccctcttaatcagctct 25658596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 25992066 - 25992018
Alignment:
Q  155 aaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||| |||||||| |||||||||||||||||||| ||||| ||||||||    
T  25992066 aaagaactgactctcgatctcgaatcaaaagcgattggcccaccagact 25992018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 25658166 - 25658276
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagactctgaaaacaaatcagtaaggcacctctcacccccgatcaacc 245  Q
    |||||||| |||| ||||||||||  ||| |||||||||||||  |||| || ||| || | || |||||||| |||||||| ||||| | ||||| | |    
T  25658166 acttgaattaaagaactgactcccagtctagaatcaaaagcgatcggcccactagagtccgtaaccaaatcagcaaggcacccctcacactcgatccatc 25658265  T
Q  246 ggagaagacac 256  Q
    | |||||||||    
T  25658266 gaagaagacac 25658276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 34378159 - 34378109
Alignment:
Q  153 tcaaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    |||||| |||||||||||||||||||||||||| ||  |||| ||||||||    
T  34378159 tcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagact 34378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 39024463 - 39024505
Alignment:
Q  146 acttgaatcaaagcactgactcccgatctcgaatcaaaagcga 188  Q
    ||||||| ||||| | |||||||||||||||||||||||||||    
T  39024463 acttgaaccaaagaagtgactcccgatctcgaatcaaaagcga 39024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 1038 - 1087
Alignment:
Q  154 caaagcactgactcccgatctcgaatcaaaagcgactggcctaccagact 203  Q
    ||||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  1038 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagact 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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