View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1025_low_20 (Length: 251)

Name: NF1025_low_20
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1025_low_20
NF1025_low_20
[»] chr3 (2 HSPs)
chr3 (1-241)||(42205703-42205943)
chr3 (98-209)||(41798761-41798872)
[»] chr4 (2 HSPs)
chr4 (5-241)||(49354305-49354537)
chr4 (63-241)||(49344437-49344613)
[»] chr1 (2 HSPs)
chr1 (118-225)||(17683910-17684017)
chr1 (98-223)||(29915827-29915952)
[»] chr7 (4 HSPs)
chr7 (107-225)||(3701754-3701872)
chr7 (98-225)||(3678295-3678418)
chr7 (187-225)||(3673379-3673417)
chr7 (3-82)||(38811134-38811213)
[»] chr2 (1 HSPs)
chr2 (109-193)||(8385296-8385379)
[»] chr6 (2 HSPs)
chr6 (132-184)||(16589607-16589659)
chr6 (132-184)||(16605721-16605773)
[»] chr5 (3 HSPs)
chr5 (178-225)||(17340383-17340430)
chr5 (7-56)||(40383705-40383754)
chr5 (12-72)||(16924892-16924952)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42205943 - 42205703
Alignment:
Q  1 tagagggttgctaacttagaccaagctaaaaacaataatgtttaagttagcaagtgcggacattttcatttggacataaaaaattcattgtcgctagttt 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42205943 tagagagttgctaacttagaccaagctaaaaacaataatgtttaagttagcaagtgcgtacattttcatttggacataaaaaattcattgtcgctagttt 42205844  T
Q  101 acacccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205843 acacccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcatgtt 42205744  T
Q  201 tataattgtgtgttccaaaacataatatccgacctcctatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42205743 tataattgtgtgttccaaaacataatatccgacctcctatg 42205703  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 41798872 - 41798761
Alignment:
Q  98 tttacacccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcat 197  Q
    |||||| ||| |||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  41798872 tttacatccaatttgctaatttacagcaactttatttatgaacaaaaagaattaatgaaacatatttgtatacatttgtgtttattttgatttgtttcat 41798773  T
Q  198 gtttataattgt 209  Q
    ||||||||||||    
T  41798772 gtttataattgt 41798761  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 49354305 - 49354537
Alignment:
Q  5 gggttgctaacttagaccaagctaaaaacaataatgtttaagttagcaagtgcggacattttcatttggacataaaaaattcattgtcgctagtttacac 104  Q
    ||||||||||||||| |||| ||| ||||| |||||| ||| |||||||||| |    |||| |||||||||||||||  | |||  | |||||||| ||    
T  49354305 gggttgctaacttagtccaacctataaacattaatgtctaaattagcaagtgtgtttctttttatttggacataaaaatct-attaccactagtttatac 49354403  T
Q  105 ccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcatgtttata 204  Q
    |||||||||||| ||||| |||||||||||||||| ||||||| |||  ||||||||||| |||||||||||||||||||||| || || ||||||||||    
T  49354404 ccactttgctaatttacaacaactttatttatgaagcaaaagaattatcgaaacatatttatatacatttgtgtttattttaa-tttttccatgtttata 49354502  T
Q  205 attgtgtgttccaaaacataatatccgacctcctatg 241  Q
    ||  | ||||||||||||||||| |||||||| ||||    
T  49354503 at--tttgttccaaaacataatacccgacctcttatg 49354537  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 49344437 - 49344613
Alignment:
Q  63 ttttcatttggacataaaaaattcattgtcgctagtttacacccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacata- 161  Q
    |||||||||||||||||||| | ||||| | || |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||| |||     
T  49344437 ttttcatttggacataaaaa-tccattgccactggtttacacccactttgctaatttacaacaactttatttatgaaccaaaagaattaacgaaaaatat 49344535  T
Q  162 tttgtatacatttgtgtttattttaacttgtttcatgtttataattgtgtgttccaaaacataatatccgacctcctatg 241  Q
    ||| |||||||||||||||||||||| || || |||||||||||   |||||||||||||||||| ||| ||||||||||    
T  49344536 tttatatacatttgtgtttattttaattttttccatgtttataa--atgtgttccaaaacataatgtccaacctcctatg 49344613  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 17683910 - 17684017
Alignment:
Q  118 ttacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcatgtttataattgtgtgttcca 217  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||    
T  17683910 ttacaccaactttatttatgaatcaaatgaattaatgaaacatatttgtatacatttgtgtttacttagacttgttttatgtttataattgtgtgttcca 17684009  T
Q  218 aaacataa 225  Q
    ||||||||    
T  17684010 aaacataa 17684017  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 29915827 - 29915952
Alignment:
Q  98 tttacacccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcat 197  Q
    |||||||||||||| | || ||||| | | |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| | |||||||||    
T  29915827 tttacacccacttttccaatttacatcgattttatttatgaaccaaaagaattaatgaaatatatttgtatgcatttgtgtttattttgatttgtttcat 29915926  T
Q  198 gtttataattgtgtgttccaaaacat 223  Q
     |||||||||||||||||||||||||    
T  29915927 ttttataattgtgtgttccaaaacat 29915952  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 3701754 - 3701872
Alignment:
Q  107 actttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcatgtttataat 206  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||| |||||   |||| |||||||||||||||||||| | || ||| |||||||||||    
T  3701754 actttactaatttacaccaactttatttatgaaccaaaagaattagtgaaatgcatttatatacatttgtgtttattttgatttatttaatgtttataat 3701853  T
Q  207 tgtgtgttccaaaacataa 225  Q
    ||| |||||||||| ||||    
T  3701854 tgtttgttccaaaatataa 3701872  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 3678295 - 3678418
Alignment:
Q  98 tttacacccactttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtttcat 197  Q
    |||||| |||||||| ||| || ||||| |||||||||| ||||||||||    ||||||||||||||||||||||| ||||||| || ||||||| |||    
T  3678295 tttacatccactttgttaagttgcaccacctttatttattaaccaaaaga----atgaaacatatttgtatacatttatgtttatgttgacttgttacat 3678390  T
Q  198 gtttataattgtgtgttccaaaacataa 225  Q
     ||||||||||| | |||||||| ||||    
T  3678391 atttataattgtttattccaaaatataa 3678418  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 3673379 - 3673417
Alignment:
Q  187 acttgtttcatgtttataattgtgtgttccaaaacataa 225  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3673379 acttgtttcatgtttataattgtgtgtttcaaaacataa 3673417  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 38811213 - 38811134
Alignment:
Q  3 gagggttgctaacttagaccaagctaaaaacaataatgtttaagttagcaagtgcggacattttcatttggacataaaaa 82  Q
    |||||||||||| || ||||||  |||||||| ||| || ||||||| |||||| |  |||||| |||||||||||||||    
T  38811213 gagggttgctaatttcgaccaatataaaaacattaacgtataagttaacaagtgtgcgcatttttatttggacataaaaa 38811134  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 8385296 - 8385379
Alignment:
Q  109 tttgctaaattacaccaactttatttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattttaacttgtt 193  Q
    |||||||| || |||||| |||||||||||||||   || ||||||||||||||||||| ||||||||||| |||||||||||||    
T  8385296 tttgctaattttcaccaaatttatttatgaaccatc-gaattaatgaaacatatttgtagacatttgtgttaattttaacttgtt 8385379  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 16589607 - 16589659
Alignment:
Q  132 tttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattt 184  Q
    |||||||| |||| ||  |||||||| ||||||||||||||||||||||||||    
T  16589607 tttatgaaacaaaggaactaatgaaatatatttgtatacatttgtgtttattt 16589659  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 16605773 - 16605721
Alignment:
Q  132 tttatgaaccaaaagagttaatgaaacatatttgtatacatttgtgtttattt 184  Q
    |||||||| |||| ||  |||||||| ||||||||||||||||||||||||||    
T  16605773 tttatgaaacaaaggaactaatgaaatatatttgtatacatttgtgtttattt 16605721  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 17340430 - 17340383
Alignment:
Q  178 tttattttaacttgtttcatgtttataattgtgtgttccaaaacataa 225  Q
    ||||||||  |||||||||||||||||||||| || ||||||||||||    
T  17340430 tttattttgccttgtttcatgtttataattgtatgctccaaaacataa 17340383  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 40383705 - 40383754
Alignment:
Q  7 gttgctaacttagaccaagctaaaaacaataatgtttaagttagcaagtg 56  Q
    |||||||||||||||||| ||||||||| ||| |  ||||||||||||||    
T  40383705 gttgctaacttagaccaacctaaaaacattaaggactaagttagcaagtg 40383754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 16924952 - 16924892
Alignment:
Q  12 taacttagaccaagctaaaaacaataatgtttaagttagcaagtgcggacattttcatttg 72  Q
    ||||||||||||| |||||||||  || || |||||||||||| ||| | |||||||||||    
T  16924952 taacttagaccaacctaaaaacataaaggtctaagttagcaagggcgtatattttcatttg 16924892  T

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