View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1025_low_22 (Length: 244)
Name: NF1025_low_22
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_low_22 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 35991487 - 35991715
Alignment:
| Q |
1 |
catgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccatatgtgtatatataatattttttggtgat |
100 |
Q |
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| T |
35991487 |
catgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgtccatatgtgtatatataatattttttggtgat |
35991586 |
T |
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| Q |
101 |
gtgatgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagtacatcctacgttgagcaactagtaattc |
200 |
Q |
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| T |
35991587 |
gtgattataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagcacatcctacgttgagcaactagtaattc |
35991686 |
T |
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| Q |
201 |
ttacaaataaagtggaattcatcttgtgcct |
231 |
Q |
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| T |
35991687 |
ttacaaataaagtgg--tccatcttgtgcct |
35991715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 207
Target Start/End: Original strand, 35980763 - 35980933
Alignment:
| Q |
36 |
ttgattgattgatgatgaacaatttctgggtgcccatatgtgtatatataatattttttggtgatgtgat-gataactaaaaacttacacagacatgcat |
134 |
Q |
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| T |
35980763 |
ttgattggttgatgatgaacaatttcacggtgttcttatgtgtatttatagtatttgttggtgatgtgattgataaataaaaac----acagacatgcat |
35980858 |
T |
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| Q |
135 |
gca-cacatatg-cataataagccaagggatattccaagtacatcctacgttgagcaactagtaattcttacaaa |
207 |
Q |
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| T |
35980859 |
gcagcaactagcacatattaagccaaaggatattccaagtacatcctatgttgagcaactagtaattcttacaaa |
35980933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 12325365 - 12325434
Alignment:
| Q |
78 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgca |
147 |
Q |
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| T |
12325365 |
tatagataatattttttggtaatatggatgataactaacaacttacatagaca-gcatgcacacatatgca |
12325434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 47543 - 47625
Alignment:
| Q |
78 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagg |
160 |
Q |
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| T |
47543 |
tatagataatattttttgataatatggatgataactaacaacttacatagaca-gcatgcacacatatgcagaagaagctaagg |
47625 |
T |
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