View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1025_low_3 (Length: 513)
Name: NF1025_low_3
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 103 - 405
Target Start/End: Complemental strand, 40750079 - 40749771
Alignment:
| Q |
103 |
gtcaggtgatttgtagagtaatatatgtagagattgagattcgaagcttagacaacctatcttttcatcttaaaaaatgtgaagttttagtcactaaact |
202 |
Q |
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| T |
40750079 |
gtcaggtgatttgtagagtaatatatgtagagattgaaattcaaagcttagacaacctatcttttcattttaaaaaatgtgaagttttagtcactaaact |
40749980 |
T |
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| Q |
203 |
ac----tcgcctgnnnnnnnnnngacagctttttgaatgttggtgttacttgtcactgttatg------ttacggtctcatcggcatgggtgtgcatagg |
292 |
Q |
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| T |
40749979 |
accggatcaactgaaaaaaa---gacagctttttggatgttggtgttacttgtcacggttatggttatgttacggtctcatcggcatgg-tgtgcatagg |
40749884 |
T |
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| Q |
293 |
atgctgtgtcgtagggtgttgggttttctttggcttacaaagttacattaaacacaccgtgtgcgtcaccatcatcataaatattcattcatatcatata |
392 |
Q |
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| T |
40749883 |
atgctgtgtcgtagggtgttgggttttctttggcttacaaagttacattaaacacaccgtgtgcgtcaccatcatcataaatattcattcatatcataac |
40749784 |
T |
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| Q |
393 |
atcaaacagtaac |
405 |
Q |
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| T |
40749783 |
atcaaacagtaac |
40749771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 40749726 - 40749663
Alignment:
| Q |
450 |
agaaacaaacaaaaaacaatcatttgaataaaattaacacattctagctagctcataattttcc |
513 |
Q |
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| T |
40749726 |
agaaacaaacaaaaaacaatcatttgaataaaataaacacattctagctagctcataattttcc |
40749663 |
T |
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