View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1025_low_4 (Length: 509)
Name: NF1025_low_4
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 29 - 494
Target Start/End: Original strand, 55668575 - 55669040
Alignment:
| Q |
29 |
accttcatctattggctatccacagaaaaaatattcagtattcgttggcgaactgccagaaagacattaactcgtgctcaatttatttttaaaatgaaat |
128 |
Q |
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| T |
55668575 |
accttcatctattggctatccacagaaaaaatattcagtattcgttggcgaactgccagaaagacattaactcgtgctcaatttatttttaaaatgaaat |
55668674 |
T |
|
| Q |
129 |
tatgttttggcatcaacagtttgaggtcaaatgtgtcatgtacttttgtgtgtaaagtgacgaggataaatagtatgagagagatagagatacacacata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55668675 |
tatgttttggcatcaacagtttgaggtcaaatgtgtcatgtacttttgtgtgtaaagtgacgaggataaatagtatgagagagatagagatacacacgta |
55668774 |
T |
|
| Q |
229 |
tagtgtcagtgttatgatgttcaaataatagttgatttcaaactgattannnnnnngaaaaagccaaagaaattatattaacacaccaaagaggttctcc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55668775 |
tagtgtcagtgttatgatgttcaaataatagttgatttcaaactgattatttttttgaaaaagccaaagaaattatattaacacaccaaagaggtactcc |
55668874 |
T |
|
| Q |
329 |
ctgatctattcctaatctttggtgtttctaaatttttattcatgtcccaaaactttggttcttctagaaaatcaagataaaattaatgacagattcaatt |
428 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55668875 |
ctgatctattcctaatctttggtgtttttaaatttttattcatgtcccaaaactttggttcttctagaaaatcaagataaaattaatgacagattcaatt |
55668974 |
T |
|
| Q |
429 |
tagcttgatgccttttttcctttctcaatttagcttagcgacatgctactaatagtgaattgcaat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55668975 |
tagcttgatgccttttttcctttctcaatttagcttagcgacatgctactaatagtgaattgcaat |
55669040 |
T |
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