View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1025_low_6 (Length: 425)
Name: NF1025_low_6
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 349
Target Start/End: Original strand, 34572318 - 34572641
Alignment:
| Q |
30 |
ggttctagttgtattgaaattgccgaaaatagctaacaaatgtgctgatgtgccacaactgcggctgcaatatggtcccaacaaccacaatgtgctcata |
129 |
Q |
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| T |
34572318 |
ggttctagttgtattgaaattgccgaaaatagctaacaaatgtgctgatgtgccacaactgcggctgcaatatggtcccaacaaccacaatgtgctcata |
34572417 |
T |
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| Q |
130 |
gactttaaattcaaaacatatgattaaagtgcttaaaccaaatctagatcaagtgaatagacattttaattagcccttaaagtaagcgtttaagttcatc |
229 |
Q |
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| T |
34572418 |
gactttaaattcaaaacatatgattaaagtgcttaaaccaaatctagatcaagtgaatagacattttaattagcccttaaagtaagcg-ttaagttcatc |
34572516 |
T |
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| Q |
230 |
ttcaaatttacaaaataggaacttaataccttaattgaaaagaag----aaaaagcaattaattcattccttcaatcaaagtgtattttaaactaaa-tt |
324 |
Q |
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| T |
34572517 |
ttcaaatttacgaaataggaacttaataccttaattgaaaagaagaaaaaaaaagcaattaattcattccttcaatcaaagtgtattttaaactaaattt |
34572616 |
T |
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| Q |
325 |
ttgtcatcacaaacaatgcctatga |
349 |
Q |
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| T |
34572617 |
ttgtcatcacaaacaatgccaatga |
34572641 |
T |
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