View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1025_low_9 (Length: 390)
Name: NF1025_low_9
Description: NF1025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1025_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 2 - 379
Target Start/End: Original strand, 34572889 - 34573270
Alignment:
| Q |
2 |
agttccagatgcaaagcgtttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgccaaaacctattatcaagagccaggttc |
101 |
Q |
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| T |
34572889 |
agttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgccaaa-cctagtatcaagatccaggttc |
34572987 |
T |
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| Q |
102 |
aatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtcttatggagaacaactttgctatgtcggaacggtactatgataaaa |
201 |
Q |
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| T |
34572988 |
aatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtctgatggagaacaactttgctatgtcggaacggtactatgataaaa |
34573087 |
T |
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| Q |
202 |
atctagtggctatggatccattttagatgaatatgttgttgagccaacagaagaaaagaaatnnnnnnntcaaaagttgaacgtcaaagacccttaatag |
301 |
Q |
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| T |
34573088 |
atctagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaataaaaaaatcaaaagttgaacgtcaaagacccttaagag |
34573187 |
T |
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| Q |
302 |
atttagatatcatatcattaatcaaaacc-----ttattaggtaaataagccacatcccttatatattcaacatttagttcat |
379 |
Q |
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| T |
34573188 |
atttagatatcatatcattaatcaaaaccttattttattaggtaaataagccacatcccttatatattcaacatttagttcat |
34573270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 38474176 - 38474240
Alignment:
| Q |
88 |
caagagccaggttcaatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttaca |
152 |
Q |
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| T |
38474176 |
caagagccaggttgaatcaagataacattaacttcaaattcatcaagtgcaatcaacattttaca |
38474240 |
T |
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