View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1026-Insertion-1 (Length: 971)

Name: NF1026-Insertion-1
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1026-Insertion-1
NF1026-Insertion-1
[»] chr1 (2 HSPs)
chr1 (670-971)||(29585285-29585584)
chr1 (561-622)||(9516629-9516691)
[»] chr5 (3 HSPs)
chr5 (558-613)||(13515991-13516046)
chr5 (561-622)||(32020052-32020114)
chr5 (568-616)||(15241025-15241074)
[»] chr2 (1 HSPs)
chr2 (561-622)||(36731228-36731290)
[»] chr8 (1 HSPs)
chr8 (568-622)||(29642651-29642705)
[»] chr7 (3 HSPs)
chr7 (561-622)||(19868162-19868224)
chr7 (563-613)||(32117872-32117922)
chr7 (561-615)||(2276730-2276785)
[»] chr4 (4 HSPs)
chr4 (563-613)||(27756619-27756669)
chr4 (561-622)||(9326935-9326999)
chr4 (561-622)||(9373657-9373721)
chr4 (561-622)||(9381969-9382033)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 670 - 971
Target Start/End: Complemental strand, 29585584 - 29585285
Alignment:
Q  670 acaaacccatcaaaatatat-aagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc 768  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585584 acaaacccatcaaaatatatcaagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc 29585485  T
Q  769 tacatacatacataagtcaaaaaagtcaggagaaaactacgcaaacttgcgtttttgaagaaagtgcaacatcactctcaaatctcaatggttgattcca 868  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585484 tacatacata----agtcaaaaaagtcaggagaaaactacgcaaacttgcgtttttgaagaaagtgcaacatcactctcaaatctcaatggttgattcca 29585389  T
Q  869 ctcctccaacttcaactatttcttctaatggcaccgccatttcttcttgtttccgacgaacggttg-ttactcactttccccttcacttcactctcaccc 967  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29585388 ctcctccaacttcaactatttcttctaatggcaccgccacttcttcttgtttccgacgaacggttgcttactcactttccccttcacttcactctcaccc 29585289  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 9516691 - 9516629
Alignment:
Q  561 tgtattctatattaaatagataattttttgataa-taattgatgtttttcaatgaaaaattac 622  Q
    |||||| ||||||||||| |||| ||||| |||| |||||| |||||||||||||||| ||||    
T  9516691 tgtattttatattaaatatataactttttaataaataattggtgtttttcaatgaaaagttac 9516629  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 558 - 613
Target Start/End: Original strand, 13515991 - 13516046
Alignment:
Q  558 ttatgtattctatattaaatagataattttttgataataattgatgtttttcaatg 613  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  13515991 ttatatattctatattaaatagataattttttaataataattgatattttccaatg 13516046  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 32020052 - 32020114
Alignment:
Q  561 tgtattctatattaaatagataa-ttttttgataataattgatgtttttcaatgaaaaattac 622  Q
    ||||||||||||||||||||||| |||||| |||||||| | |||||||||| ||||| ||||    
T  32020052 tgtattctatattaaatagataacttttttaataataatcggtgtttttcaaagaaaagttac 32020114  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 616
Target Start/End: Original strand, 15241025 - 15241074
Alignment:
Q  568 tatattaaatagataattttttgataa-taattgatgtttttcaatgaaa 616  Q
    ||||||||||| |||||||||| |||| |||||| |||||||||||||||    
T  15241025 tatattaaatatataattttttaataaataattgttgtttttcaatgaaa 15241074  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 36731290 - 36731228
Alignment:
Q  561 tgtattctatattaaatagataatt-ttttgataataattgatgtttttcaatgaaaaattac 622  Q
    ||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||| ||||    
T  36731290 tgtattctatattaaatagataatttttttaataataattagtgtttttcaatgaaaagttac 36731228  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 29642705 - 29642651
Alignment:
Q  568 tatattaaatagataattttttgataataattgatgtttttcaatgaaaaattac 622  Q
    ||||||||||||| || ||||| |||||||||| |||||||||||||||| ||||    
T  29642705 tatattaaatagacaactttttaataataattggtgtttttcaatgaaaagttac 29642651  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 622
Target Start/End: Complemental strand, 19868224 - 19868162
Alignment:
Q  561 tgtattctatattaaatagataattttttgataa-taattgatgtttttcaatgaaaaattac 622  Q
    |||||| ||||||||||| |||| |||||||||| |||||| |||||||||||||||| ||||    
T  19868224 tgtattttatattaaatatataactttttgataaataattggtgtttttcaatgaaaatttac 19868162  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 563 - 613
Target Start/End: Complemental strand, 32117922 - 32117872
Alignment:
Q  563 tattctatattaaatagataattttttgataataattgatgtttttcaatg 613  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  32117922 tattctatattaaatagataactttttaataataattggtgttttccaatg 32117872  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 615
Target Start/End: Complemental strand, 2276785 - 2276730
Alignment:
Q  561 tgtattctatattaaatagataattttttgat-aataattgatgtttttcaatgaa 615  Q
    |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||||    
T  2276785 tgtattttatattaaatagataactttttaataaataattggtgtttttcaatgaa 2276730  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 563 - 613
Target Start/End: Complemental strand, 27756669 - 27756619
Alignment:
Q  563 tattctatattaaatagataattttttgataataattgatgtttttcaatg 613  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  27756669 tattctatattaaatagataactttttaataataattggtgttttccaatg 27756619  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 9326935 - 9326999
Alignment:
Q  561 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 622  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9326935 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9326999  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 9373657 - 9373721
Alignment:
Q  561 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 622  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9373657 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9373721  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 9381969 - 9382033
Alignment:
Q  561 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 622  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9381969 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9382033  T

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