View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1026-Insertion-17 (Length: 248)
Name: NF1026-Insertion-17
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026-Insertion-17 |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 1615289 - 1615054
Alignment:
| Q |
8 |
aacattgtgaagcttgaaagaagaatgactatatatgtatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtgg |
107 |
Q |
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| T |
1615289 |
aacattgtgaagcttgaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtgg |
1615190 |
T |
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| Q |
108 |
actaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1615189 |
actaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttca-----a |
1615095 |
T |
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| Q |
208 |
ctgcaccgtatcggttttattttcttctctttgcctttgtc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1615094 |
ctgcaccgtatcggttttattttcttctctttgcctttgtc |
1615054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 24455846 - 24456036
Alignment:
| Q |
50 |
tttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgct |
149 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
24455846 |
tttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgcagctgct |
24455945 |
T |
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| Q |
150 |
atgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctttgt |
247 |
Q |
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| T |
24455946 |
acgtagtggtattttttcctccctatgttctgatttttctc--tgtggtccag-----ctgcaccatatcggttttattttcttctctttgcctttgt |
24456036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 24455414 - 24455447
Alignment:
| Q |
11 |
attgtgaagcttgaaagaagaatgactatatatg |
44 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24455414 |
attgtgaagcttgaaagaagaatgactatatatg |
24455447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 49234533 - 49234334
Alignment:
| Q |
41 |
tatgtatagtttggagagagatcgaggtgattttct-gcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtat |
139 |
Q |
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|||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
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| T |
49234533 |
tatgcataatttggagcgagatcgaggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtac |
49234434 |
T |
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| Q |
140 |
tgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctcttt |
239 |
Q |
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| T |
49234433 |
tgcagctgctacatagtggcattttttcctccctgtgttctgatttgtctatttgtgttccagctgcaa-----catattggttttaatttcttctcttt |
49234339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 49233952 - 49233763
Alignment:
| Q |
50 |
tttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgct |
149 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
49233952 |
tttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactacagctgct |
49233853 |
T |
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| Q |
150 |
atgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctt |
244 |
Q |
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| T |
49233852 |
acatagtggcattctttcctccctgtgttttgatttgtctatttgtgttccagctgcaa-----catattggttttaatttcttctctttgcctt |
49233763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 50862525 - 50862714
Alignment:
| Q |
50 |
tttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgct |
149 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||| || ||||||| |||||||| | |
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| T |
50862525 |
tttggagcgagatcgaggtgattttctgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgcagctggt |
50862624 |
T |
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| Q |
150 |
atgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctt |
244 |
Q |
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| ||||||| ||||||| |||| |||||||||||| ||| ||| |||| || |||||| | ||| |||||| ||||||||||||||||| |
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| T |
50862625 |
acatagtggcgttttttcctccctgtgttctgatttgtctatttgtgttcca-----actgcaacatattagttttaatttcttctctttgcctt |
50862714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 47723991 - 47724037
Alignment:
| Q |
50 |
tttggagagagatcgaggtgattttctgcataatttagagctggttt |
96 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
47723991 |
tttggagcgagatcgaggtgattttctgcatcatttagagctggttt |
47724037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 47730983 - 47731029
Alignment:
| Q |
50 |
tttggagagagatcgaggtgattttctgcataatttagagctggttt |
96 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
47730983 |
tttggagcgagatcgaggtgattttctgcatcatttagagctggttt |
47731029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 43228082 - 43228269
Alignment:
| Q |
50 |
tttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgct |
149 |
Q |
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||||||| ||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| | | ||||||| || |
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| T |
43228082 |
tttggagtgagatcggggtgattttctgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttct |
43228181 |
T |
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| Q |
150 |
atgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctt |
244 |
Q |
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| | ||||| ||||||| |||| | |||||||||| |||| | |||| ||| ||||| | ||||||||||| ||||||||||||||||| |
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| T |
43228182 |
acctggtggcgttttttcctccctgcgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttactttcttctctttgcctt |
43228269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 14839131 - 14839307
Alignment:
| Q |
65 |
aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcatttt |
164 |
Q |
| |
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|||| |||||| |||| |||||||||||||||| ||| |||||||||||| |||||| || ||||||||||| |||| |||||| |||| || |||| |
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| T |
14839131 |
aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagtttt |
14839230 |
T |
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| Q |
165 |
ttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctttgtc |
248 |
Q |
| |
|
||| |||| |||||||||| |||| | |||| ||| ||||| | |||||||||||||||||||||||| ||| |||| |
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| T |
14839231 |
ttcctccctacgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttattttcttctcttttcctctgtc |
14839307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 43227631 - 43227662
Alignment:
| Q |
8 |
aacattgtgaagcttgaaagaagaatgactat |
39 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
43227631 |
aacattgtgaagcttgaaagaagaatgactat |
43227662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 27962559 - 27962383
Alignment:
| Q |
65 |
aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcatttt |
164 |
Q |
| |
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|||| |||||| |||| |||||||||||||||| ||| |||||||||||| |||||| || ||||||||||| |||| |||||| |||| || |||| |
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| T |
27962559 |
aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagtttt |
27962460 |
T |
|
| Q |
165 |
ttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctttgtc |
248 |
Q |
| |
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||| |||| |||||||||| |||| | |||| ||| ||||| | |||||||||||||||||||||||| ||| |||| |
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| T |
27962459 |
ttcctccctacgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttattttcttctcttttcctctgtc |
27962383 |
T |
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