View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1026-Insertion-5 (Length: 446)
Name: NF1026-Insertion-5
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026-Insertion-5 |
 | |
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| [»] chr7 (4 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
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| [»] scaffold1407 (1 HSPs) |
| | |
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| [»] scaffold1661 (1 HSPs) |
| | |
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| [»] scaffold0029 (2 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
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| [»] scaffold0177 (1 HSPs) |
| | |
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| [»] scaffold0334 (1 HSPs) |
| | |
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| [»] scaffold0226 (1 HSPs) |
| | |
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| [»] scaffold0059 (1 HSPs) |
| | |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Original strand, 15932682 - 15933122
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15932682 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
15932781 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaaattcagaac |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15932782 |
aagacaccaagctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaac |
15932881 |
T |
|
| Q |
206 |
ctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15932882 |
ctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattt |
15932981 |
T |
|
| Q |
306 |
tccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaata |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15932982 |
tccaattgccatgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaata |
15933081 |
T |
|
| Q |
406 |
gtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15933082 |
gtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
15933122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Original strand, 15941024 - 15941464
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15941024 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
15941123 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaaattcagaac |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15941124 |
aagacaccaagctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaac |
15941223 |
T |
|
| Q |
206 |
ctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15941224 |
ctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaacttagtttttcttgccatattt |
15941323 |
T |
|
| Q |
306 |
tccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaata |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15941324 |
tccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaata |
15941423 |
T |
|
| Q |
406 |
gtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15941424 |
gtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
15941464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 7157681 - 7157829
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||| | |||||||||| |
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|
| T |
7157681 |
cagtttgcccacttccttcgttttctccactacttgagacatgatcagacgcacttcag-gcagatttcaacctataaataaacctggaaaactcagttg |
7157779 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaaactgcttat |
155 |
Q |
| |
|
||||||||||| || ||||||||| | |||||||||||| | |||||| |
|
|
| T |
7157780 |
tggacaccaagcttttcagagagaaattttgttatttagaatccgcttat |
7157829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 47921976 - 47921831
Alignment:
| Q |
8 |
gtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaa |
107 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| | |||||| ||| |
|
|
| T |
47921976 |
gtttgcccacttccatcattttttccactacttaagacatgatcagaagcacttcagggcagatttcagcctataaataaacctggaaaactcacttgtg |
47921877 |
T |
|
| Q |
108 |
gacaccaagctctttagagagaaactgtgttatttagaaactgctt |
153 |
Q |
| |
|
||||||||||| | |||||| ||| | | ||||||||||||||| |
|
|
| T |
47921876 |
gacaccaagctttatagagataaattcagcaatttagaaactgctt |
47921831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Original strand, 11164113 - 11164560
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164113 |
cagttttctcacttcctccattttctccactactaggaacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
11164212 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaaactg-------cttatcgtaatttaagcttttgtttagctatcgtacaattttacaaat |
198 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11164213 |
aagacaccaagctttttagagagaaattgtgttatttagaaactgattattgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatt |
11164312 |
T |
|
| Q |
199 |
tcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgc |
298 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164313 |
tcagaacctttcttaattgcaattttgaattaagtaactatttcaatttctagttcctgttttcatcattcctttttcattccaatttagtttttcttgc |
11164412 |
T |
|
| Q |
299 |
catattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaa |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11164413 |
catattttccaattgccgtgttgctacctaccttgctttaactcaagccatgagtctatattgttgtgtggctatttaattgaatttccattgctaagaa |
11164512 |
T |
|
| Q |
399 |
ttcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164513 |
ttcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
11164560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 16635662 - 16635792
Alignment:
| Q |
25 |
attttctccactacttgaga-catgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagc-tcttt |
122 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||| | ||| |
|
|
| T |
16635662 |
attttctccactact-gagaacatgatcagaagcatttcagagccgatttttcc-tataaatagacctaaagaattcagttgaagacaccaagctttttt |
16635759 |
T |
|
| Q |
123 |
agagagaaactgtgttatttagaaactgcttat |
155 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |
|
|
| T |
16635760 |
agagagaaacttagcaatttagaaaccgcttat |
16635792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 50881771 - 50881662
Alignment:
| Q |
24 |
cattttctccactacttgagacatgatcagaagcacttcagagcagat-ttttccctataaatagacctgaagaactcagttgaagacaccaagc-tctt |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||| || |||||||||||| |||||||| | || |
|
|
| T |
50881771 |
cattttctccaccacttgagacatgatcagaggcacttcaaagcagattttttgcctataaatagaccttaaagactcagttgaaggcaccaagcatttt |
50881672 |
T |
|
| Q |
122 |
tagagagaaa |
131 |
Q |
| |
|
|||||||||| |
|
|
| T |
50881671 |
tagagagaaa |
50881662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Original strand, 34657102 - 34657554
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| | |||||||||| |
|
|
| T |
34657102 |
cagtttgcccacttccttcattttctccactacttgagacatgatcagaagcacttcag-gcagatttcagcctataaataaacctggaaaactcagttg |
34657200 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaaactgct-------------tatcgtaatttaagcttttgtttagctatcgtacaatttt |
192 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34657201 |
tggacaccaagctttttagagagaaattgtgttatttagaaactgcttatttttattgcttatcgtaatttaagcttttgtttagctatcgtacaatttt |
34657300 |
T |
|
| Q |
193 |
acaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaatttagtttt |
292 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34657301 |
acaatttcagaacctttgttaattgcaattttgaattaagttactatttcaatttctagttcctgttttcatcattcctttttcattccaatttagtttt |
34657400 |
T |
|
| Q |
293 |
tcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgc |
392 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34657401 |
tcttgccgtattttccaattgccgtgttgctacctaccttgctttaactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgc |
34657500 |
T |
|
| Q |
393 |
taagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccg |
446 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34657501 |
taagaattcaatagtgctgtgtgtatttcttcaaattcctggctgcaccgtccg |
34657554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 20934394 - 20934269
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20934394 |
cagtttgcccactttcttcattttctccactacttgagatatgatcagaagcacttcagagcagatttttctctataaatagacctgaagaactcagttg |
20934295 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaa |
131 |
Q |
| |
|
|| ||||||||| |||||||||||| |
|
|
| T |
20934294 |
aatacaccaagcattttagagagaaa |
20934269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 19183853 - 19183930
Alignment:
| Q |
46 |
atgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagctcttta |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19183853 |
atgaccagaagcacttcagagcagatttttccccataaataaacctgaagaactcagttgaagacaccaagcttttta |
19183930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 31232256 - 31232370
Alignment:
| Q |
14 |
ccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcaga-tttttccctataaatagacctgaagaactcagttgaagacac |
112 |
Q |
| |
|
|||||| |||||||||||||||| |||| || ||||||||||||| |||||||| | ||||| |||||||||| | || || ||||||||||||| ||| |
|
|
| T |
31232256 |
ccacttccttcattttctccactgcttgggatgtgatcagaagcac-tcagagcatattttttgcctataaata-aacttaaaaactcagttgaaggcac |
31232353 |
T |
|
| Q |
113 |
caagctctttagagaga |
129 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
31232354 |
caagctttttaaagaga |
31232370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 1415 - 1239
Alignment:
| Q |
48 |
gatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagctctttagagagaaactgtgttatttagaaa |
147 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
1415 |
gatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaaaggggcaagctttttagagagaaactgtgttatttagaaa |
1316 |
T |
|
| Q |
148 |
ctgcttatcgtaatttaagcttttgtttagctatcgtacaatt-ttacaaattcagaacctttgttaattgcaatttt |
224 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
1315 |
ctgcttat-gtaattcaagcttttgtttagctatcatacaattcttacaacttcagaacctttgtgaattgcaatttt |
1239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 11177830 - 11177718
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177830 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
11177731 |
T |
|
| Q |
106 |
aagacaccaagct |
118 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11177730 |
aagacaccaagct |
11177718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 23046575 - 23046717
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgaga-catgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagtt |
104 |
Q |
| |
|
|||||| | ||||| || ||||||||||||| |||||| ||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23046575 |
cagttttctcacttcctccattttctccactg-ttgagaacatgatcaggaacacttgagagcagatttttccctataaataaacctgaagaactcagtt |
23046673 |
T |
|
| Q |
105 |
gaagacaccaagctctttagagagaaactgtgttatttagaaac |
148 |
Q |
| |
|
||||||||||||| ||||||||| | | ||||||||||||| |
|
|
| T |
23046674 |
gaagacaccaagcatattagagagagattcagttatttagaaac |
23046717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 3793455 - 3793419
Alignment:
| Q |
24 |
cattttctccactacttgagacatgatcagaagcact |
60 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3793455 |
cattttctccacctcttgagacatgatcagaagcact |
3793419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 3831640 - 3831604
Alignment:
| Q |
24 |
cattttctccactacttgagacatgatcagaagcact |
60 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3831640 |
cattttctccacctcttgagacatgatcagaagcact |
3831604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 19901923 - 19901798
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19901923 |
cagtttgcccactttcttcattttctccactacttgagacatgatcggaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
19901824 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaa |
131 |
Q |
| |
|
|| ||||||||| |||||||||||| |
|
|
| T |
19901823 |
aatacaccaagcattttagagagaaa |
19901798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1661 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold1661
Description:
Target: scaffold1661; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 256 - 153
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
256 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
157 |
T |
|
| Q |
106 |
aaga |
109 |
Q |
| |
|
|||| |
|
|
| T |
156 |
aaga |
153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 88746 - 88643
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88746 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
88647 |
T |
|
| Q |
106 |
aaga |
109 |
Q |
| |
|
|||| |
|
|
| T |
88646 |
aaga |
88643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 77131 - 77047
Alignment:
| Q |
70 |
atttttccctataaatagacctgaagaactcagttgaagacaccaagctctttagagagaaactgtgttatttagaaactgcttat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| | |||||||||||| |||||||| |
|
|
| T |
77131 |
atttttccctataaatagacctgaagaactcagttgaagac-ccaagcttttcagagagaaattttgttatttagaatctgcttat |
77047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 9612 - 9752
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9612 |
cagttttctcacttcctccattttctccactactaggaacatgatcagaagcacttcaaagcagatttttccctataaatagacttgaagaactcagttg |
9711 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaa |
146 |
Q |
| |
|
| ||||||||||| || ||||||||| | |||||||||||| |
|
|
| T |
9712 |
atgacaccaagcttttcagagagaaattttgttatttagaa |
9752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 32430 - 32609
Alignment:
| Q |
48 |
gatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcag-ttgaagacaccaagctctttagagagaaactgtgttatttag-a |
145 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||| ||||||| | |
|
|
| T |
32430 |
gatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagaaagaagaaaagaagct-tttagagagaaactgtgctatttagaa |
32528 |
T |
|
| Q |
146 |
aactgcttatcgtaatttaagctttt--gtttagctatcgtacaat-tttacaaattcagaacctttgttaattgcaatttt |
224 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||| |||||| ||||||| |||||| |||||||||||| |
|
|
| T |
32529 |
aactgcttat-gtaattcaagctttttgttttagctatcgtacaatccttacaacttcagaatctttgtgaattgcaatttt |
32609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 16137 - 16286
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16137 |
cagttttctcacttgctccattttctccactactaggaacatgatcagaagcacttcaaagcagatttttctctataaatagacctgaagaactcagttg |
16236 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaactgtgttatttagaaactgcttat |
155 |
Q |
| |
|
| ||||||||||| | || | ||||| | || |||||||||||| |||| |
|
|
| T |
16237 |
atgacaccaagctttatacaaagaaatttagtgatttagaaactgattat |
16286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 23689284 - 23689409
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||| | ||||| || ||| |||||||||||||| |||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23689284 |
cagttttctcacttcctccatattctccactacttgggacatgatatgaagcacctcaaaggagatttttgcctataaatagacctgaagaactcagttg |
23689383 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaa |
131 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
23689384 |
aagacaccaagctttttagagagaaa |
23689409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 3543 - 3668
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| | |||||||||| |
|
|
| T |
3543 |
cagtttgcccacttcctccattttctccactacttgagacatgatcagaagcacttcagggcagatttcagcctataaataaacctggaaaactcagttg |
3642 |
T |
|
| Q |
106 |
aagacaccaagctctttagagagaaa |
131 |
Q |
| |
|
| ||||||| |||||||||||| |
|
|
| T |
3643 |
tgaataccaagcattttagagagaaa |
3668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 39260 - 39161
Alignment:
| Q |
6 |
cagtttgcccactttcttcattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttg |
105 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || || | |||||||||| |
|
|
| T |
39260 |
cagtttgcccacttcctccattttctccactacttgagacatgatcagaagcacttcagggcagatttcagcctataaataaacttggaaaactcagttg |
39161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 17951157 - 17951072
Alignment:
| Q |
24 |
cattttctccactacttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaaga |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
17951157 |
cattttctccactacttgggacatgatcagaagcacttcagagccaattttatcctataaataaaccttgaaaactcagttgaaga |
17951072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 7589131 - 7589056
Alignment:
| Q |
80 |
ataaatagacctgaagaactcagttgaagacaccaagctctttagagagaaactgtgttatttagaaactgcttat |
155 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||||| | |||||||||||| | |||||||||| |||||| |
|
|
| T |
7589131 |
ataaatagacatgaagaactcatttgaaggcaccaagctttctagagagaaacttagcaatttagaaaccgcttat |
7589056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 8403 - 8367
Alignment:
| Q |
24 |
cattttctccactacttgagacatgatcagaagcact |
60 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8403 |
cattttctccacctcttgagacatgatcagaagcact |
8367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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