View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1026-Insertion-6 (Length: 245)
Name: NF1026-Insertion-6
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 38296918 - 38296995
Alignment:
| Q |
168 |
gcattatcttttaagacagttttagattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagca |
245 |
Q |
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| T |
38296918 |
gcattatctttcaagacagttttggattccaactccattcgtaaaaaagacaagacggggtatgagtcctatccagca |
38296995 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 38296774 - 38296826
Alignment:
| Q |
24 |
aaaaaggcaggagtacaagtagttaaaagccatgacagcaacccaccctattg |
76 |
Q |
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| T |
38296774 |
aaaaaggcagcactacaagtagttaaaagccatgacagcaacacaccctattg |
38296826 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 24018451 - 24018401
Alignment:
| Q |
192 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatcca |
242 |
Q |
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| T |
24018451 |
gattccaacaccattcgtaaaaaagacaggacgggaaatgagttctatcca |
24018401 |
T |
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