View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1026-Insertion-9 (Length: 179)
Name: NF1026-Insertion-9
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 6e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 49679410 - 49679240
Alignment:
| Q |
8 |
gttccctcccagttgccaacaaataaaccatagcagattgatcgtctgcttcgaaaaccggacgattctttaactccctagtaagaatcttcccagcttc |
107 |
Q |
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| T |
49679410 |
gttccctcccagttgccaacaaataaaccatagcagattgatcatctgcttcgaaaaccggtcgattctttaactccctagtaagaatcttcccagcttc |
49679311 |
T |
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| Q |
108 |
atctctaatcttccctttaggtcccattggcgcccaagcatcaagaatatcaagtgaccactgacaattcc |
178 |
Q |
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| T |
49679310 |
atctctaatcttccctttaggtcccattggtgcccaagcatcaagaatatcaagtgaccactgacaattcc |
49679240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 55608148 - 55608088
Alignment:
| Q |
118 |
ttccctttaggtcccattggcgcccaagcatcaagaatatcaagtgaccactgacaattcc |
178 |
Q |
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| T |
55608148 |
ttcccttttggccccattggtgcccaagtatcaagaatatccaatgaccattaacaattcc |
55608088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 20181108 - 20181264
Alignment:
| Q |
22 |
gccaacaaataaaccatagcagattgatcgtctgcttcgaaaaccggacgattctttaactccctagtaagaatcttcccagcttcatctctaatcttcc |
121 |
Q |
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| T |
20181108 |
gccaacaaataaaccatagcagattgatcatccgcttcaaaaactggcctacctttgagttcgcgcgtaagtattttccccgcttcatccctaactttcc |
20181207 |
T |
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| Q |
122 |
ctttaggtcccattggcgcccaagcatcaagaatatcaagtgaccactgacaattcc |
178 |
Q |
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| T |
20181208 |
ccttcggtcccattggtgcccaagcatcaagaatatccaatgaccactgacagttcc |
20181264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 44268456 - 44268612
Alignment:
| Q |
22 |
gccaacaaataaaccatagcagattgatcgtctgcttcgaaaaccggacgattctttaactccctagtaagaatcttcccagcttcatctctaatcttcc |
121 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||| ||||| || | | || | || | ||||| || ||||| |||||||| |||| |||| |
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| T |
44268456 |
gccaacaaataaaccatagcagattgatcatccgcttcaaaaactggcctacctttgagttcgcgcgtaagtattttccccgcttcatccctaactttcc |
44268555 |
T |
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| Q |
122 |
ctttaggtcccattggcgcccaagcatcaagaatatcaagtgaccactgacaattcc |
178 |
Q |
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| T |
44268556 |
ccttcggtcccattggtgcccaagcatcaagaatatccaatgaccactgacagttcc |
44268612 |
T |
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