View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10260_high_15 (Length: 329)
Name: NF10260_high_15
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 40663681 - 40663988
Alignment:
| Q |
1 |
aagacgattcattaaaactcaaaaacaggcatattaattcagaagtttatacttaacacggttgttaatactaaaagtaatcaaaaccaggcacattatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40663681 |
aagacaattcattaaaactcaaaaacaggcatattaattcagaagtttatacttaacacggttgttaatactaaaagtaatcaaaaccaggcacattatt |
40663780 |
T |
|
| Q |
101 |
atttgattgaaactacaagcttgaaaccatcaaatgggaaaacaaaaagaatgaaagaagcaatctagaacaaaccgatgggtgatagttaccttagtcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40663781 |
atttgattgaaactacaagcttgaaaccatcaaatgggaaaacaaaaagaatgaaagaagcaatctagaacaaaccgat-ggtgatagttaccttagtcc |
40663879 |
T |
|
| Q |
201 |
ggccatagggattcatggcttgtaacttgaaatcctccacacagggtatcgtgtcaggttgaccataaacagtagcagatgatgaaaaaaccatctgtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40663880 |
ggccatagggattcatggcttgtaacttgaaatcctccacacagggtatcgtgtcaggttgaccataaacagtagcagatgatgaaaaaaccatctgtgc |
40663979 |
T |
|
| Q |
301 |
agaagcaca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
40663980 |
agaagcaca |
40663988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University