View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_high_24 (Length: 245)
Name: NF10260_high_24
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 45540146 - 45539931
Alignment:
| Q |
11 |
caaaggttacagcaagaacccgttaaaacaccataccacnnnnnnnnnnnntcatgtcaaagtttaaggaaaaacacattttgtttcgaactaacaaact |
110 |
Q |
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| T |
45540146 |
caaatgttacaacaagaacccgttaaaacaccataccacaaaaacaaaaaatcatgtcaaagtttaaggaaaaacacattttgtttcgaactaacaaact |
45540047 |
T |
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| Q |
111 |
ttcaaactcatttgaatttgaaatgcatgtattatactctgattcaagtaaagatgaaaaataaaaatttcaaatgacttgtaatttagagagcatacac |
210 |
Q |
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| T |
45540046 |
ttcaaactcatttgaatttgaaatgcatgtattatactctgattcaagtagagatgaaaaataaaaatttcaaatgacttgtaatttagatagcatacac |
45539947 |
T |
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| Q |
211 |
taactttacataacca |
226 |
Q |
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| T |
45539946 |
taactttacataacca |
45539931 |
T |
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