View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10260_high_25 (Length: 242)
Name: NF10260_high_25
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_high_25 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30048690 - 30048464
Alignment:
| Q |
1 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30048690 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctgcaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
30048591 |
T |
|
| Q |
101 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30048590 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
30048491 |
T |
|
| Q |
201 |
ttttgcagaaaatgtgagtcaattctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30048490 |
ttttgcagaaaatgtgagtcaattctg |
30048464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7161047 - 7160818
Alignment:
| Q |
1 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
7161047 |
ccattcccaaaaaatacttcatcaatcccagcaccgtcatttcaaggacctgcaacatgctcttcttaaacttgttattctcatcaatgtcattaccggt |
7160948 |
T |
|
| Q |
101 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7160947 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacaatctttaacataaagtgtaggctcattttgactcctcctgaaatca |
7160848 |
T |
|
| Q |
201 |
ttttgcagaaaatgtgagtcaattctgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7160847 |
ttttgcagaaaatgtgagtcaattctgatg |
7160818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 197325 - 197551
Alignment:
| Q |
1 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
197325 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctgcaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
197424 |
T |
|
| Q |
101 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
197425 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
197524 |
T |
|
| Q |
201 |
ttttgcagaaaatgtgagtcaattctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
197525 |
ttttgcagaaaatgtgagtcaattctg |
197551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3944944 - 3944719
Alignment:
| Q |
1 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3944944 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
3944845 |
T |
|
| Q |
101 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944844 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattttttaacataaagtgtaggctcattttgactcctcctgaaatca |
3944745 |
T |
|
| Q |
201 |
ttttgcagaaaatgtgagtcaattct |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3944744 |
ttttgcagaaaatgtgagtcaattct |
3944719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39950486 - 39950712
Alignment:
| Q |
1 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39950486 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctgcaacatgctcttcttaaacttgttaatctcatcgatgtcattaccggt |
39950585 |
T |
|
| Q |
101 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39950586 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
39950685 |
T |
|
| Q |
201 |
ttttgcagaaaatgtgagtcaattctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39950686 |
ttttgcagaaaatgtgagtcaattctg |
39950712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22364572 - 22364346
Alignment:
| Q |
1 |
ccattcccaaaaaatacttcatcaatcccaggtccgtcatttcaaagacctccaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22364572 |
ccattcccaaaaaatacttcatcaatcccagatccgtcatttcaaagacctgcaacatgctcttcttaaacttgttaatctcatcaatgtcattaccggt |
22364473 |
T |
|
| Q |
101 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacattctttaacataaagtgtaggctcattttgactcctcctgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364472 |
aatcaacaagtcatcaacataaagagaaactataatcctcttcccattgccacaatctttaacataaagtgtaggctcattttgactcctcctgaaatca |
22364373 |
T |
|
| Q |
201 |
ttttgcagaaaatgtgagtcaattctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22364372 |
ttttgcagaaaatgtgagtcaattctg |
22364346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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