View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_high_29 (Length: 232)
Name: NF10260_high_29
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_high_29 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30048905 - 30048674
Alignment:
| Q |
1 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30048905 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
30048806 |
T |
|
| Q |
101 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30048805 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
30048706 |
T |
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| Q |
201 |
caagctgatgcaattccattcccaaaaaatac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30048705 |
caagctgatgcaattccattcccaaaaaatac |
30048674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 7161262 - 7161031
Alignment:
| Q |
1 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7161262 |
atctagtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagatttcgagagtttttca |
7161163 |
T |
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| Q |
101 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161162 |
tttacagcaagaggtgttgaaacagacttacaactctccaatttgaattttttcagaacatcattagcatatttcttttgtgaaagaaatattccatcat |
7161063 |
T |
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| Q |
201 |
caagctgatgcaattccattcccaaaaaatac |
232 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
7161062 |
caagttgatgcaattccattcccaaaaaatac |
7161031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 197110 - 197341
Alignment:
| Q |
1 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
197110 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
197209 |
T |
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| Q |
101 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
197210 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
197309 |
T |
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| Q |
201 |
caagctgatgcaattccattcccaaaaaatac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
197310 |
caagctgatgcaattccattcccaaaaaatac |
197341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3945159 - 3944928
Alignment:
| Q |
1 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945159 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
3945060 |
T |
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| Q |
101 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945059 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
3944960 |
T |
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| Q |
201 |
caagctgatgcaattccattcccaaaaaatac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3944959 |
caagctgatgcaattccattcccaaaaaatac |
3944928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 22364787 - 22364556
Alignment:
| Q |
1 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364787 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
22364688 |
T |
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| Q |
101 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364687 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
22364588 |
T |
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| Q |
201 |
caagctgatgcaattccattcccaaaaaatac |
232 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
22364587 |
caagttgatgcaattccattcccaaaaaatac |
22364556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39950271 - 39950502
Alignment:
| Q |
1 |
atctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39950271 |
atctggtctagttgcagtcaagtaaagaagacaacctatcaaactcctatattgagtaacatctgccttagcatctccatcagattttgagagtttttca |
39950370 |
T |
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| Q |
101 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttcagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39950371 |
tttacagcaagaggtgttgaaacagatttacaactctccaatttgaattttttaagcacatcattagcatatttcttttgtgaaagaaatattccatcat |
39950470 |
T |
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| Q |
201 |
caagctgatgcaattccattcccaaaaaatac |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
39950471 |
caagctgatgcaattccattcccaaaaaatac |
39950502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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