View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_high_3 (Length: 704)

Name: NF10260_high_3
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_high_3
NF10260_high_3
[»] chr8 (4 HSPs)
chr8 (235-495)||(12529833-12530093)
chr8 (492-678)||(12530128-12530314)
chr8 (136-185)||(12529741-12529789)
chr8 (312-362)||(43745866-43745913)
[»] chr7 (23 HSPs)
chr7 (235-431)||(8582628-8582824)
chr7 (235-462)||(8538769-8538996)
chr7 (236-462)||(8546641-8546867)
chr7 (235-454)||(8572555-8572774)
chr7 (270-443)||(8577289-8577462)
chr7 (235-338)||(8568803-8568906)
chr7 (238-368)||(7876838-7876968)
chr7 (236-362)||(8602700-8602826)
chr7 (238-362)||(8647669-8647793)
chr7 (348-431)||(8560773-8560856)
chr7 (238-468)||(8610632-8610862)
chr7 (239-362)||(13332160-13332283)
chr7 (236-362)||(8591364-8591490)
chr7 (236-466)||(29581071-29581301)
chr7 (238-359)||(8635512-8635633)
chr7 (239-359)||(29577002-29577122)
chr7 (259-362)||(3148360-3148463)
chr7 (239-371)||(27829346-27829478)
chr7 (316-368)||(10493005-10493057)
chr7 (310-362)||(17261432-17261484)
chr7 (316-362)||(6790456-6790502)
chr7 (316-362)||(8668511-8668557)
chr7 (274-350)||(8660248-8660324)
[»] chr2 (6 HSPs)
chr2 (270-446)||(12257840-12258016)
chr2 (316-442)||(7543323-7543449)
chr2 (270-431)||(12244344-12244505)
chr2 (270-431)||(14705463-14705624)
chr2 (316-368)||(12000379-12000431)
chr2 (272-359)||(16656613-16656700)
[»] chr4 (4 HSPs)
chr4 (270-438)||(35133454-35133622)
chr4 (316-362)||(9323074-9323120)
chr4 (316-362)||(9335046-9335092)
chr4 (316-362)||(9377553-9377599)
[»] chr5 (2 HSPs)
chr5 (283-362)||(42554197-42554276)
chr5 (316-362)||(28220993-28221039)
[»] chr1 (2 HSPs)
chr1 (273-371)||(4677541-4677639)
chr1 (273-461)||(34465159-34465347)
[»] chr3 (2 HSPs)
chr3 (16-73)||(48580342-48580399)
chr3 (26-118)||(3138169-3138261)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 235 - 495
Target Start/End: Original strand, 12529833 - 12530093
Alignment:
Q  235 gaattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 334  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12529833 gaattaccaaagatagtgttggtggggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 12529932  T
Q  335 ttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12529933 ttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctat 12530032  T
Q  435 agcaactccttcatactttttggccattctctttgaagtgagtgaaatgaaactgttaata 495  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12530033 agcaactccttcatacttttttgccattctctttgaagtgagtgaaatgaaactgttaata 12530093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 492 - 678
Target Start/End: Original strand, 12530128 - 12530314
Alignment:
Q  492 aatatgaaaagtatataagctgaatgtgttatgtgcatgtgtttgattccctaaaatgaattcatacagtcccttctttgtcggttcacattgcatgcgt 591  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12530128 aatatgaaaagtacataagctgaatgtgttatgtgcatgtgtttgattccctaaaatgaattcatacagtcccttctttgtcggttcacattgcatgcgt 12530227  T
Q  592 tacgtatggaaattctgcattaaaaaagtttgagtcttttggttgatcggcagtaataatttcattatttattttagagtgaagata 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12530228 tacgtatggaaattctgcattaaaaaagtttgagtcttttggttgatcggcagtaataatttcattatttattttagagtgaagata 12530314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 12529741 - 12529789
Alignment:
Q  136 aaagttaattatgtttttgatccggttaacctctttatatttttagggac 185  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  12529741 aaagttaattatgtttttgatccagtaaacctctttat-tttttagggac 12529789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 43745866 - 43745913
Alignment:
Q  312 agtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||||||| ||||||   |||||||||| |||||||||||||||||    
T  43745866 agtaaaagcaacaaaagaag---ttgttttgttgccttgatcattgtgaat 43745913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 9e-69; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 235 - 431
Target Start/End: Original strand, 8582628 - 8582824
Alignment:
Q  235 gaattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 334  Q
    ||||||||| ||||||||||||| ||||| || | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  8582628 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 8582727  T
Q  335 ttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcc 431  Q
    ||||||||||||||||||||||||| || ||||||||||||||  ||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||    
T  8582728 ttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattcc 8582824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 235 - 462
Target Start/End: Original strand, 8538769 - 8538996
Alignment:
Q  235 gaattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 334  Q
    ||||||||||||| |||||| || ||||| ||||||||||||||||||||||||| |||||||||||  ||||||||| ||||| |||||||||||||||    
T  8538769 gaattaccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtg 8538868  T
Q  335 ttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctat 434  Q
    | ||||||||||||||||| ||||| || || |||||||||||  ||||||| ||||| ||||||||||||||||| || |||||||| |||||||| ||    
T  8538869 tggttttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattccgat 8538968  T
Q  435 agcaactccttcatactttttggccatt 462  Q
    |||| |||| ||||| ||||| ||||||    
T  8538969 agcagctccctcatatttttttgccatt 8538996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 236 - 462
Target Start/End: Original strand, 8546641 - 8546867
Alignment:
Q  236 aattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgt 335  Q
    |||||||||| | ||||||| | ||||| || ||||| |||||||||||||||| ||||||||  || || ||||| || ||||||||||||||||||||    
T  8546641 aattaccaaatacagtgttgattgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgt 8546740  T
Q  336 tgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctata 435  Q
    ||||||||||||||||||||||||||| ||||||||||||||  | ||||| |||||||||||||||||||||||||| |||||||| |||||||| ||     
T  8546741 tgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattccgatc 8546840  T
Q  436 gcaactccttcatactttttggccatt 462  Q
    |||||||| ||||| ||||| ||||||    
T  8546841 gcaactccctcatatttttttgccatt 8546867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 235 - 454
Target Start/End: Original strand, 8572555 - 8572774
Alignment:
Q  235 gaattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 334  Q
    ||||||||||||||||| ||||  || || |  | |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| || |    
T  8572555 gaattaccaaagatagtattggatggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggag 8572654  T
Q  335 ttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctat 434  Q
    ||||| |||||||||| |||||||| || ||||| ||||||||| ||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||    
T  8572655 ttgttctgtttccttggtcattgtgtatgatttcaacacgatcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattccgat 8572754  T
Q  435 agcaactccttcatactttt 454  Q
     |||||||| ||||| ||||    
T  8572755 cgcaactccctcatattttt 8572774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 270 - 443
Target Start/End: Original strand, 8577289 - 8577462
Alignment:
Q  270 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcc 369  Q
    ||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||| || ||| ||||||||||||||||||| || |||||     
T  8577289 agcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttct 8577388  T
Q  370 acacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactcc 443  Q
    ||||||||  |||| || |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||    
T  8577389 acacgatcgttttgttcatgccatactccaacacatgagtaagtcgtgccaaggtcaattccaatggcaactcc 8577462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 8568803 - 8568906
Alignment:
Q  235 gaattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 334  Q
    |||||||||||| |||||||||| || || || | |||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||||    
T  8568803 gaattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtg 8568902  T
Q  335 ttgt 338  Q
    ||||    
T  8568903 ttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 7876968 - 7876838
Alignment:
Q  238 ttaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttg 337  Q
    |||||||||| ||||||||  ||||| |||| ||| |||||||||||||||| ||||||||| || |||  ||| || ||||||||| ||||||||||||    
T  7876968 ttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttg 7876869  T
Q  338 ttttgtttccttgatcattgtgaattatttc 368  Q
    || |||| ||||| ||||||||||| |||||    
T  7876868 ttctgttgccttgttcattgtgaataatttc 7876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 8602700 - 8602826
Alignment:
Q  236 aattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgt 335  Q
    ||||||||||||||||||||   ||||| || | ||| |||||||||||||||| ||| ||||| || | |  || ||||||||||||| ||||||| ||    
T  8602700 aattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagt 8602799  T
Q  336 tgttttgtttccttgatcattgtgaat 362  Q
     ||| ||||||||||||||||||||||    
T  8602800 agttctgtttccttgatcattgtgaat 8602826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 8647669 - 8647793
Alignment:
Q  238 ttaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttg 337  Q
    |||||||||| ||||||||| ||||| || | ||| |||||||| || |||| ||||||||| || |||  ||  || ||||||||| |||||||||| |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  338 ttttgtttccttgatcattgtgaat 362  Q
    || ||||||||||||||||||||||    
T  8647769 ttctgtttccttgatcattgtgaat 8647793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 8560773 - 8560856
Alignment:
Q  348 ttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcc 431  Q
    |||||||||||| || |||||||||||||   ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattcc 8560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 468
Target Start/End: Original strand, 8610632 - 8610862
Alignment:
Q  238 ttaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttg 337  Q
    ||||||||||  ||||| |  |||||||| | |||||||||||| ||||||| ||| ||||| || |||  |  ||  ||||||||| ||||||| || |    
T  8610632 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 8610731  T
Q  338 ttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagc 437  Q
    || |||||||||| ||||| || ||||| ||  | |  |   |||| || ||||||||  |||||||||| || ||||| |||||||||||||| |||||    
T  8610732 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagc 8610831  T
Q  438 aactccttcatactttttggccattctcttt 468  Q
    |  ||| ||||| ||||||||||||||||||    
T  8610832 aggtccctcatattttttggccattctcttt 8610862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 13332283 - 13332160
Alignment:
Q  239 taccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgt 338  Q
    ||||||||||||||||    ||||| | || || |||||| |||||||||| |||||||||||| |||  |||  | ||||||||| |||||||||| ||    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  339 tttgtttccttgatcattgtgaat 362  Q
    | | ||||||||||||||||||||    
T  13332183 tctatttccttgatcattgtgaat 13332160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 8591364 - 8591490
Alignment:
Q  236 aattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgt 335  Q
    ||||||| |||| |||||| |  ||||| || | ||| || ||||| ||||||| ||||||||| || |||  |||||||||||||||| ||||||||||    
T  8591364 aattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgt 8591463  T
Q  336 tgttttgtttccttgatcattgtgaat 362  Q
      || | ||||||||||||||||||||    
T  8591464 aattctatttccttgatcattgtgaat 8591490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 466
Target Start/End: Complemental strand, 29581301 - 29581071
Alignment:
Q  236 aattaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgt 335  Q
    ||||||||||||||||||| || ||||||| || ||| |||||||| ||||||| || |||||| ||| | || | ||| ||||| |||  |||||||||    
T  29581301 aattaccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgt 29581202  T
Q  336 tgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctata 435  Q
     |||   || |||||||||||||| || || ||  | || |   | | ||| ||||| ||| | |||||||| || |||||||| || || ||||| |||    
T  29581201 ggttccattgccttgatcattgtggatgatctcagctcggttgatattctcctgccaaactgctacacatgaataggttgtgccgaggtcgattccgata 29581102  T
Q  436 gcaactccttcatactttttggccattctct 466  Q
    |||  ||||||||| ||||||||||||||||    
T  29581101 gcaggtccttcatattttttggccattctct 29581071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 8635633 - 8635512
Alignment:
Q  238 ttaccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttg 337  Q
    |||||||||| ||| ||||  ||||| |||||||| || ||||||||||||| ||||||||| || || |  | ||| ||||||||||||||||||||      
T  8635633 ttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtga 8635534  T
Q  338 ttttgtttccttgatcattgtg 359  Q
    || |||| ||||| ||||||||    
T  8635533 ttctgttcccttgctcattgtg 8635512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 29577122 - 29577002
Alignment:
Q  239 taccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgt 338  Q
    |||| |||||||||||||| |||||||||| ||| |||||||| ||||||| |||||| || ||  | |||| ||| ||||| |||  ||||||||| ||    
T  29577122 taccgaagatagtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggt 29577023  T
Q  339 tttgtttccttgatcattgtg 359  Q
    | | || ||||||||||||||    
T  29577022 tctattgccttgatcattgtg 29577002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 362
Target Start/End: Original strand, 3148360 - 3148463
Alignment:
Q  259 gggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 358  Q
    ||||||| || ||||||||| || ||||||| ||||| ||| || |||  || ||| ||||||||| |||||||||| |||||||| ||||| |||||||    
T  3148360 gggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgt 3148459  T
Q  359 gaat 362  Q
    ||||    
T  3148460 gaat 3148463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 27829478 - 27829346
Alignment:
Q  239 taccaaagatagtgttggtggggtttgaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgt 338  Q
    ||||||||||||||||    ||||| || | |||||| || || ||||||| ||||||||| |||||    |  || |||||||||||||||||||||||    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  339 tttgtttccttgatcattgtgaattatttccac 371  Q
     ||||| ||||| ||||||||||| || |||||    
T  27829378 cttgttgccttgttcattgtgaataatctccac 27829346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 10493057 - 10493005
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttc 368  Q
    ||||||||| |||||||||| ||| | |||||||||||||||||||| |||||    
T  10493057 aaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttc 10493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 17261432 - 17261484
Alignment:
Q  310 ttagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    |||| |||||||||| ||||||| ||  |||||||||||||||||||||||||    
T  17261432 ttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaat 17261484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 6790456 - 6790502
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  6790456 aaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaat 6790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 8668511 - 8668557
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||| ||||||||||| ||  |||||||||||||||||||||    
T  8668511 aaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaat 8668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 8660248 - 8660324
Alignment:
Q  274 tgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttg 350  Q
    ||||| || ||||||| ||||||||| || |||   | ||| ||||||||| | |||||||||||||||||||||||    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttg 8660324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 12258016 - 12257840
Alignment:
Q  270 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcc 369  Q
    ||||||||| || ||||||| ||||||||| || |||   ||||||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||     
T  12258016 agcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatctca 12257917  T
Q  370 acacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttc 446  Q
     | |||  |  ||| || ||||| ||  |||| ||||| || ||||||||||| ||||||||||| |||| ||||||    
T  12257916 gctcgacaatattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcctatcgcaagtccttc 12257840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 316 - 442
Target Start/End: Original strand, 7543323 - 7543449
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccacacgatcagt-ttgctcttgccatactccaacacatgagtaagtt 414  Q
    ||||||||| |||||||||||||| |||| ||||| || |||||||| ||||| || |||| ||| ||| || ||||||||| ||||||| ||||| |||    
T  7543323 aaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgatttcaactcgat-agtgttgatcctgccatactgcaacacaagagtacgtt 7543421  T
Q  415 gtgccaagatcaattcctatagcaactc 442  Q
    |||||||| || |||||||| |||||||    
T  7543422 gtgccaaggtctattcctattgcaactc 7543449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 431
Target Start/End: Complemental strand, 12244505 - 12244344
Alignment:
Q  270 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcc 369  Q
    |||||||||||| ||||||| |||||| || || |||   | ||| |||||||||||||||||||||||| |||| || ||||| |||||||| |||||     
T  12244505 agcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttca 12244406  T
Q  370 acacgatcagt-ttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcc 431  Q
    ||||||  ||| ||| || ||||||||| |||||||||| || ||||| ||||| || |||||    
T  12244405 acacga-gagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcc 12244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 431
Target Start/End: Original strand, 14705463 - 14705624
Alignment:
Q  270 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcc 369  Q
    ||||||||| || ||||||| ||||||||| | ||||   |  || ||||||||| ||||||| |||||| | || |||||||| |||||||| |||||     
T  14705463 agcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttca 14705562  T
Q  370 acacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcc 431  Q
    || |||| |  ||| || ||||||||| ||||||||||||| ||||| ||||| || |||||    
T  14705563 actcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 12000379 - 12000431
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttc 368  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||||| |||||    
T  12000379 aaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttc 12000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 359
Target Start/End: Complemental strand, 16656700 - 16656613
Alignment:
Q  272 cttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 359  Q
    ||||||| || ||||||| ||| ||||| || |||  || ||| ||||||||| |||||||||||||| ||||||| || ||||||||    
T  16656700 cttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtg 16656613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 270 - 438
Target Start/End: Original strand, 35133454 - 35133622
Alignment:
Q  270 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcc 369  Q
    ||||||||| || ||||||| ||| ||||| || |||   ||||| ||||||| ||||||||||||||||||||| | |||||| |||||||| |||||     
T  35133454 agcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatttcg 35133553  T
Q  370 acacgatcagt-ttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagca 438  Q
    || |||| ||| ||| |||||||||||| |||||||||| || ||||| || || || ||||| ||||||    
T  35133554 actcgat-agtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagca 35133622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 9323120 - 9323074
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9323120 aaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9323074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 9335092 - 9335046
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9335092 aaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9335046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 9377599 - 9377553
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9377599 aaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9377553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 42554276 - 42554197
Alignment:
Q  283 gcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||| ||||||||| || | |  || ||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaat 42554197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 28220993 - 28221039
Alignment:
Q  316 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 362  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  28220993 aaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaat 28221039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 4677639 - 4677541
Alignment:
Q  273 ttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccac 371  Q
    |||||| || ||||||| ||||||||| || |||  || ||||||||||||| ||||||||||||||||||| ||||| ||||||| ||| || |||||    
T  4677639 ttgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac 4677541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 461
Target Start/End: Complemental strand, 34465347 - 34465159
Alignment:
Q  273 ttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccaca 372  Q
    |||||| || ||||||| ||| |||||||| |||  || ||||||||||||| |||||||||| ||| |||| ||||| ||||||| ||| || || ||     
T  34465347 ttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctact 34465248  T
Q  373 cgatcagt-ttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttcatactttttggccat 461  Q
    | | | || ||| || ||||||||| ||||||||||||| ||||||||||| || ||||| | ||||  ||||||| | ||||| |||||    
T  34465247 cta-ctgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtccttcacattttttcgccat 34465159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 48580399 - 48580342
Alignment:
Q  16 atttgttagctagagcaacattgtcttatgctagtcatcacactttttattatattcc 73  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||||    
T  48580399 atttcttagctagagcaacattgtcttatgttagtcaccacacttttgatcatattcc 48580342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 3138169 - 3138261
Alignment:
Q  26 tagagcaacattgtcttatgctagtcatcacactttttattatattccggcatgaattaggactattttgatgaatgaaacgagttaagtttg 118  Q
    |||| ||||||||||||||| |||||| || |||| | |||||||||   |||  | || ||||||||||||||||||||  |||||| ||||    
T  3138169 tagaacaacattgtcttatgatagtcaccaaacttatgattatattcaaccatataatacgactattttgatgaatgaaataagttaaatttg 3138261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University