View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_high_30 (Length: 230)
Name: NF10260_high_30
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47712794 - 47713013
Alignment:
| Q |
1 |
actctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaac |
100 |
Q |
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| T |
47712794 |
actctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaac |
47712893 |
T |
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| Q |
101 |
tcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttag |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712894 |
tcaatatctttctttaaacaatcagcaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttag |
47712993 |
T |
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| Q |
201 |
ccaatacaatcttcttctct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
47712994 |
ccaatacaatcttcttctct |
47713013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 15835226 - 15835421
Alignment:
| Q |
25 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
124 |
Q |
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| T |
15835226 |
atcaaaggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatca |
15835325 |
T |
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| Q |
125 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
220 |
Q |
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| T |
15835326 |
gcaaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctct |
15835421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 19785668 - 19785473
Alignment:
| Q |
25 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
124 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||| |||||||| || || || ||| | ||||| |||||||||||| || ||| ||||| ||||||||| |
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| T |
19785668 |
atcaaaggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatca |
19785569 |
T |
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| Q |
125 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
220 |
Q |
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| T |
19785568 |
gcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctct |
19785473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 19795919 - 19796114
Alignment:
| Q |
25 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
124 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||| ||||||||||| || || ||| |||||| ||||||||||||| | ||| ||||| ||||||||| |
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| T |
19795919 |
atcaaaggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatca |
19796018 |
T |
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| Q |
125 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
220 |
Q |
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| ||||||||||| |||||||| |||||||||||||||| || || | |||| || ||||||||||||||||| ||| ||||| |||||||| |
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| T |
19796019 |
gcgaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctct |
19796114 |
T |
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