View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_11 (Length: 487)
Name: NF10260_low_11
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 6510393 - 6509939
Alignment:
| Q |
18 |
catcatatgaaatgtaaaaagaaaggaagggtgggagaggttgtgatgaagattgatataagtaacgcatatgatagagtttaataggattatctgaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6510393 |
catcatatgaaatgtaaaaagaaaggaagggtgggagaggttgtgaggaagattgatataagtaacgcatatgatagagtttaatgggattatctgaagg |
6510294 |
T |
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| Q |
118 |
aaattatgaggagaatgggtctccatgatattttggtggaatggatgagtatgtgtatgaagagtgttaattatcaagtgattgttaatggggagagagt |
217 |
Q |
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| T |
6510293 |
aaattatgaggagaatgggtctccatgatattttggtgaaatggatgagtatgtgtatgaacagtgttaattatcaagtgattgttaatggggagagagt |
6510194 |
T |
|
| Q |
218 |
gagacctattatcccaaagagaggtcatcgacagggtgacccactgtcaccttatctgttcataatttgtgtggagggtctctctgcacaattaaagaaa |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510193 |
gagacctattatcccaaagagaggtcttcgacagggtgacccactgtcaccttatctgttcataatttgtgtggagggtctctctgcacaattaaagaaa |
6510094 |
T |
|
| Q |
318 |
gctgaagcgagagtggatattcatggtgtgaagttgtgtcgagaagcactaatcctcacacaccttttatttgctgacgaatgtttcattttttgcaagg |
417 |
Q |
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| T |
6510093 |
gctgaagcgagagtggatattcatggtgtgaagttgtgtcgaggagcactaatcctcacacaccttttatttgctgacgattgtttcattttttgcaagg |
6509994 |
T |
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| Q |
418 |
caaatatgcaagaaagtataaagttgaaagaaatattacaatcttatgaagctat |
472 |
Q |
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| T |
6509993 |
caaatatgcaagaaagtataaagttgaaagaaatattacaatcttatgaagctat |
6509939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 18980229 - 18979967
Alignment:
| Q |
18 |
catcatatgaaatgtaaaaagaaaggaagggtgggagaggttgtgatgaagattgatataagtaacgcatatgatagagtttaataggattatctgaagg |
117 |
Q |
| |
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||||||||||| ||||||| || ||| | |||||| ||||||| |||||||||| || || || || |||||||||||| | | ||| ||| | ||| |
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| T |
18980229 |
catcatatgaagtgtaaaaggagaggcaaggtgggggaggttgctttgaagattgacatcagcaaagcctatgatagagttgagtgggagtatgtaaaga |
18980130 |
T |
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| Q |
118 |
aaattatgaggagaatgggtctccatgatattttggtggaatggatgagtatgtgtatgaagagtgttaattatcaagtgattgttaatggggagagagt |
217 |
Q |
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| T |
18980129 |
aagtaatgtgcagaatgggttttcatgatagatgggtaaaatggatgactatgtgtatggaaagtggtaactatcaagtgcttgtaaatgaggagagagt |
18980030 |
T |
|
| Q |
218 |
gagacctattatcccaaagagaggtcatcgacagggtgacccactgtcaccttatctgttcat |
280 |
Q |
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| T |
18980029 |
gggaccagtcgttccaaagagaggtttgaggcagggtgacccactgtcaccttatcttttcat |
18979967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 32757870 - 32757786
Alignment:
| Q |
159 |
tggatgagtatgtgtatgaagagtgttaattatcaagtgattgttaatggggagagagtgagacctattatcccaaagagaggtc |
243 |
Q |
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| T |
32757870 |
tggatgactatgtgtattgaaagtgttaattatcaagtgcttgttaatggagagagtgtgggaccaattaatccaaagagaggtc |
32757786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 414
Target Start/End: Complemental strand, 38197616 - 38197523
Alignment:
| Q |
321 |
gaagcgagagtggatattcatggtgtgaagttgtgtcgagaagcactaatcctcacacaccttttatttgctgacgaatgtttcattttttgca |
414 |
Q |
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|||||||||||||| |||||||| | |||| ||||||| | ||| | | |||||||| |||| ||||||||||| || |||||| | ||||||| |
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| T |
38197616 |
gaagcgagagtggacattcatggagggaaggtgtgtcggggagctccactcctcacatacctattatttgctgatgattgtttcttattttgca |
38197523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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