View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_12 (Length: 465)

Name: NF10260_low_12
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_12
NF10260_low_12
[»] chr7 (1 HSPs)
chr7 (1-448)||(44850783-44851217)
[»] chr8 (2 HSPs)
chr8 (169-218)||(16464130-16464179)
chr8 (180-220)||(43534935-43534975)
[»] chr2 (2 HSPs)
chr2 (167-226)||(11781565-11781624)
chr2 (168-214)||(10735215-10735261)
[»] chr5 (1 HSPs)
chr5 (180-225)||(39828477-39828522)
[»] chr4 (2 HSPs)
chr4 (183-220)||(30127682-30127719)
chr4 (180-220)||(3587931-3587971)
[»] chr3 (1 HSPs)
chr3 (167-220)||(30243122-30243175)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 44851217 - 44850783
Alignment:
Q  1 gagcaatgaagcatctgtgctgcttctctctacttgttttttggctgaacagcccttgcatgtgctgcacctataatatcccctgtagatttgtaccaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44851217 gagcaatgaagcatctgtgctgcttctctctacttgttttttggctgaacagcccttgcatgtgctgcacctataatatcccctgtagatttgtaccaac 44851118  T
Q  101 attaaccaaactgcaataggaagtgctaacacaaacaccgggacacaatactaatatcgacaagtctcgacaccaatattaatttgagaaaatgaaattt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44851117 attaaccaaactgcaataggaagtgccaacacaaacaccgggacacaatactaatattgacaagtctcgacaccaatattaatttgagaaaatgaaattt 44851018  T
Q  201 ttgaatataaccacatgtgttggtgtgggaaactgacaccgacacgacgctttcaatatgaagagtagggtgctactgtagcatattcaaatctagatag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851017 ttgaatataaccacatgtgttggtgtgggaaactgacaccgacacgacgctttcaatatgaagagtagggtgctactgtagcatattcaaatctagatag 44850918  T
Q  301 aattcaacttctgtagccttagagttgagaacttccacattggcgaagaatccaaa-tagttcttaacttacttatcatactcaattaaacccactattt 399  Q
    ||||||||||||||||||||||||||||||||||              |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44850917 aattcaacttctgtagccttagagttgagaactt--------------aatccaaattagttcttaacttacttatcatactcaattaaacccactattt 44850832  T
Q  400 tttatcaaaaccatttcttgatagaccgtgttataaaagaactattctt 448  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44850831 tttatcaaaaccatttattgatagaccgtgttataaaagaactattctt 44850783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 16464130 - 16464179
Alignment:
Q  169 gacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgt 218  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||    
T  16464130 gacaccaatagtaatttgagaaaatgaaattgttgaatgtaaacacatgt 16464179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 43534935 - 43534975
Alignment:
Q  180 taatttgagaaaatgaaatttttgaatataaccacatgtgt 220  Q
    ||||||||||||||||||| ||||||| |||| ||||||||    
T  43534935 taatttgagaaaatgaaatatttgaatgtaactacatgtgt 43534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 11781624 - 11781565
Alignment:
Q  167 tcgacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgtgttggtgt 226  Q
    ||||||||| || ||||||||||||||||||| ||||||| |||| |||||  |||||||    
T  11781624 tcgacaccagtaataatttgagaaaatgaaatatttgaatgtaactacatgctttggtgt 11781565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 10735215 - 10735261
Alignment:
Q  168 cgacaccaatattaatttgagaaaatgaaatttttgaatataaccac 214  Q
    ||||||||||| ||||||| ||||||||||| |||||||| ||||||    
T  10735215 cgacaccaataataatttgggaaaatgaaatatttgaatacaaccac 10735261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 39828477 - 39828522
Alignment:
Q  180 taatttgagaaaatgaaatttttgaatataaccacatgtgttggtg 225  Q
    ||||||||||| |||||||  |||||| ||||||||||||||||||    
T  39828477 taatttgagaatatgaaataattgaatgtaaccacatgtgttggtg 39828522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 30127719 - 30127682
Alignment:
Q  183 tttgagaaaatgaaatttttgaatataaccacatgtgt 220  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  30127719 tttgagaaaatgaaattattgaatgtaaccacatgtgt 30127682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 3587931 - 3587971
Alignment:
Q  180 taatttgagaaaatgaaatttttgaatataaccacatgtgt 220  Q
    |||||||||||| |||||| ||||||| |||||||||||||    
T  3587931 taatttgagaaagtgaaatatttgaatgtaaccacatgtgt 3587971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 30243122 - 30243175
Alignment:
Q  167 tcgacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgtgt 220  Q
    |||||||| |||  ||||||||| ||||||||  ||||||||||||||||||||    
T  30243122 tcgacaccgataacaatttgagagaatgaaatagttgaatataaccacatgtgt 30243175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University