View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_13 (Length: 454)
Name: NF10260_low_13
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 44851472 - 44851897
Alignment:
| Q |
9 |
ggacatcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctat |
108 |
Q |
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| T |
44851472 |
ggacatcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctat |
44851571 |
T |
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| Q |
109 |
gcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacga |
208 |
Q |
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| T |
44851572 |
gcacagttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacga |
44851671 |
T |
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| Q |
209 |
ggagcattttttctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44851672 |
ggagcattttttctgatgaaaggattcctgttgccccttcttgattgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatg |
44851761 |
T |
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| Q |
309 |
tattgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851762 |
tattgttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatc |
44851861 |
T |
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| Q |
409 |
ccttactgacacgcaatactacgtccctaccctttg |
444 |
Q |
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| T |
44851862 |
ccatactgacacgcaatactacgtccctaccctttg |
44851897 |
T |
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