View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_14 (Length: 450)
Name: NF10260_low_14
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 8337969 - 8337540
Alignment:
| Q |
16 |
cactctatatatatactaatgtacagtatcatcttct---aaagtgagggtcaatattatgtgtcatttaatgaaggaatggaaattaatattttctttt |
112 |
Q |
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| T |
8337969 |
cactctatatatatactaatgtacagtatcatcttcttctaaagtgagggtcaatattatgtgtcatttaatgaaggaatagaaattaatattttctttt |
8337870 |
T |
|
| Q |
113 |
tgactccaatgaatggcagaaattatattgtcta-tctttctgaaattaagtgaaaacatatgtcgatatgttttattacgagagtaagtactaaacttt |
211 |
Q |
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| T |
8337869 |
tgactccaatgaatggcagaaattatattgtctagtctttctgaaattaagtgaaaacatatttcgatatgttttattacaagagtaagtactaaacttt |
8337770 |
T |
|
| Q |
212 |
gtttgttctttaagagttttcttttgcaaaactctttaagaaaaacatcaaaattatatagcttagtcttgtttctaagagtggagaagttgcattaaat |
311 |
Q |
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| T |
8337769 |
gtttgttctttaagagttttcttttacaaaactctttaagaaaaacatcaaaattatatagcctagtcttgtttctaagagtggagaagttgcattaaat |
8337670 |
T |
|
| Q |
312 |
ggaaatgaaaatattgttattatatttactacacattttgatcactattataagcattaaaccat-ttttaagttcattcaataaatgatgtagacagca |
410 |
Q |
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| T |
8337669 |
ggaaatgaaaatattgttattatatttactacacatttcgatcactattataagcattaaaccattttttaagttcattcaataaatgatgtagacagca |
8337570 |
T |
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| Q |
411 |
tattatatagacatcatacatcaattcatc |
440 |
Q |
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| T |
8337569 |
tattatatagacatcatacatcaattcatc |
8337540 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 3106080 - 3106028
Alignment:
| Q |
351 |
gatcactattataagcattaaaccatttttaagttcattcaataaatgatgta |
403 |
Q |
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| T |
3106080 |
gatcactattataaacaaaaaacaacttttaggttcattcaataaatgatgta |
3106028 |
T |
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