View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_15 (Length: 446)
Name: NF10260_low_15
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 28 - 429
Target Start/End: Complemental strand, 37216314 - 37215913
Alignment:
| Q |
28 |
acgttggatctatatatgactgaagnnnnnnntacactgccatgtatcagcactcttcaaaagtcacaacacgcaaactttatagtagaatgaattaaat |
127 |
Q |
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| T |
37216314 |
acgttggatctatatatgactgaagaaaaaaatacactgccatgtatcagcactcttcaaaagtcacaacacgcaaactttatagtagaatgaattaaat |
37216215 |
T |
|
| Q |
128 |
ggttctttgcatacatattgacacgaatattctctccaaaaatcttaaatcaaacccctctttcccttcttctcttatggtgcacaatcttctaatttgc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37216214 |
ggttctttgcatacatattgacacgaatattctctccaaaaatcttaaatcaaacccctctttcccttcttctcttatggtgcataatcttctaatttgc |
37216115 |
T |
|
| Q |
228 |
accaatttctctcatctcttccaaaaaatttattcccaataggagtgcgagcgcatcaatctttctcatatgatcttcgtgattaatctgaagttccatc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216114 |
accaatttctctcatctcttccaaaaaatttattcccaataggagtgcgagcgcatcaatctttctcatatgatcttcgtgattaatctgaagttccatc |
37216015 |
T |
|
| Q |
328 |
ggaagaggtgatagaagtatagcgaaacattgtcgctaggaagaggggagtgatcaaaattgatgcaacaaatatactcctcttatcatcaacgattata |
427 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37216014 |
agaggaggtgattgaagtatagcgaaacattgtcgctaggaagaggggagtgatcaaaattgatgcaacaaatatactcctcttatcatcaacgactata |
37215915 |
T |
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| Q |
428 |
tt |
429 |
Q |
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| T |
37215914 |
tt |
37215913 |
T |
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