View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_16 (Length: 444)
Name: NF10260_low_16
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 177 - 433
Target Start/End: Complemental strand, 41984222 - 41983964
Alignment:
| Q |
177 |
atggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacaatgttctattttccagaagacttggtattttgtttcaattcct |
276 |
Q |
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| T |
41984222 |
atggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacactgttctattttccagaagacttggtattttgtttcaattcct |
41984123 |
T |
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| Q |
277 |
actgtttatgtttgatacatgataaagagttctaattaattagtaatttctaacttattgttgaatattctcac--tgttatttctgtatttattttcaa |
374 |
Q |
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| T |
41984122 |
actgtttatgtttgatacatgataaagagttctaattaattagtaatttctaacttattgttgaatattctcactgtgttatttctgtatttattttcaa |
41984023 |
T |
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| Q |
375 |
tgaatcttcaaatattttcttctcttcttggtaatgaaaaacaaagccgagtttcctat |
433 |
Q |
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| T |
41984022 |
tgaatcttcaaatattttcttctcttcttggtaatgaaaaacaaagccgagtttcctat |
41983964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 41985176 - 41985054
Alignment:
| Q |
19 |
acttggcaccatgcaaatttaatctttcattacttatgtcctgacaatatgacaatgatttccataagtattctattagcttgaagactttagggttttg |
118 |
Q |
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| T |
41985176 |
acttggcaccatgcaaatttaatctttcattacttatgtcctgacaatatgacaatgatttccataagtattctattagcttgaagactttagggttttg |
41985077 |
T |
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| Q |
119 |
tgtcatttcctagtaatgttcat |
141 |
Q |
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| T |
41985076 |
tgtcatttcctagtaatgttcat |
41985054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 41980321 - 41980179
Alignment:
| Q |
136 |
gttcatgtttgatacattattattttgtttcaat-cctagacatggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacaa |
234 |
Q |
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| T |
41980321 |
gttcatgtctgatacattattattttgtttcaattcctaaacttggtttaatcttttgctattatcgatgtcctggcaatatgacattgattgcccaaag |
41980222 |
T |
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| Q |
235 |
tgttctattttccagaagacttggtattttgtttcaattccta |
277 |
Q |
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| T |
41980221 |
tgatctattttctagaagaccgggtattttgtttcaattccta |
41980179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 13171241 - 13171525
Alignment:
| Q |
19 |
acttggcaccatgcaaatttaatctttcattacttatgtcctgacaatatgacaatgatttccataagtattctattagcttgaagactttagggttttg |
118 |
Q |
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||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
13171241 |
acttggcactatgcaaatttaatctttcattatttctgtcctgacaat--------gatttccataagtattctattagcttgaagacttg-gtgttttg |
13171331 |
T |
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| Q |
119 |
tgtcatttcctagtaatgttcatgtttgatacattattattttgtttcaatcctagacatggtttaatctttt----actattatttatgtcctggcaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
13171332 |
tgtcatttcctagtaatgttcatgtttgatacattattattttgtttcaatcctagacatggtttaatctttttactattattatttatgtcttggcaat |
13171431 |
T |
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| Q |
215 |
atgacagtgatatccaacaatgttctattttccagaagacttggtattttgtttcaattcctactgtttatgtttgatacatgataaagagttc |
308 |
Q |
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| T |
13171432 |
atgacagtgatatccatcactgttatattttccagaatacttggtattttatttcaattcctactgtttatgtttgatacatgataaagagttc |
13171525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 18990924 - 18990794
Alignment:
| Q |
169 |
tcctagacatggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacaatgttctattttccagaagacttggtattttgttt |
268 |
Q |
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||||| || ||||||||||||||||||||||||||||| || || ||||| |||||| |||| | | |||||||| ||||||||||||||||||| | |
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| T |
18990924 |
tcctatacttggtttaatcttttactattatttatgtcatgacagtatgatagtgattgccaaaagttttctatttcgtagaagacttggtattttgtat |
18990825 |
T |
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| Q |
269 |
caattcc---tactgtttatgtttgatacat |
296 |
Q |
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| T |
18990824 |
aaattgccagtattgtttatgtttgatacat |
18990794 |
T |
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